PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0005611.1_g000012.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HD-ZIP
Protein Properties Length: 215aa    MW: 24708.8 Da    PI: 6.3783
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0005611.1_g000012.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.21.6e-1958112357
                                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                                k++++t+eq++ Le  F +++++  e++ +LA++lgL+ rqV vWFqNrRa++k+
  Rmu_sc0005611.1_g000012.1  58 KKRKLTEEQVTLLELNFGNEHKLESEKKDRLASELGLDPRQVAVWFQNRRARWKN 112
                                45699************************************************95 PP
2HD-ZIP_I/II118.92.8e-3858149293
                HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 
                                kkr+l++eqv+lLE +F +e+kLe+e+K +la+eLgl+prqvavWFqnrRAR+k+k+lE++y+ Lk+ +++++ e+++Le+e+e
  Rmu_sc0005611.1_g000012.1  58 KKRKLTEEQVTLLELNFGNEHKLESEKKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSILKKDHENVALEKCKLESEME 141
                                9*********************************************************************************** PP

                HD-ZIP_I/II  86 eLreelke 93 
                                +L+e+l+e
  Rmu_sc0005611.1_g000012.1 142 KLKEQLSE 149
                                *****986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    
MTTTTPINHQ VDQDHMLLIS QLYPDVYTQI VPPQGAATKP RRRRKKSKSG DAGGAGAKKR  60
KLTEEQVTLL ELNFGNEHKL ESEKKDRLAS ELGLDPRQVA VWFQNRRARW KNKKLEEEYS  120
ILKKDHENVA LEKCKLESEM EKLKEQLSEA EKEIHRLSER AEGGGSSNSP SSSLSMEANI  180
DPPFFGEFGV EEYDGVFYMP QNNYINGMEW MNQYM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14160RRRRKKSKSGDAGGAGAKKR
24161RRRRKKSKSGDAGGAGAKKRK
34261RRRRKKSKSGDAGGAGAKKR
44262RRRRKKSKSGDAGGAGAKKRK
54363RRRRKKSKSGDAGGAGAKKRK
64464RRRRKKSKSGDAGGAGAKKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.15e-71HD-ZIP family protein