PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0005631.1_g000017.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HD-ZIP
Protein Properties Length: 238aa    MW: 27680 Da    PI: 8.4035
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0005631.1_g000017.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.27e-1978131356
                                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                k+ +++++qle Le+ F+++ +++ +++ +L++ lgL+ rq+ vWFqNrRa++k
  Rmu_sc0005631.1_g000017.1  78 KKKRLSTDQLESLERSFQEEIKLDPDRKMKLSRDLGLQPRQIAVWFQNRRARWK 131
                                56679************************************************9 PP
2HD-ZIP_I/II119.61.7e-3877168192
                HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                                ekk+rls++q+++LE+sF+ee kL+p+rK++l+r+Lglqprq+avWFqnrRAR+k+kqlE+ y+aLk+ yda+++e+++L++ev
  Rmu_sc0005631.1_g000017.1  77 EKKKRLSTDQLESLERSFQEEIKLDPDRKMKLSRDLGLQPRQIAVWFQNRRARWKAKQLERLYDALKQDYDAVSKEKQKLQDEV 160
                                69********************************************************************************** PP

                HD-ZIP_I/II  85 eeLreelk 92 
                                 +L++ l+
  Rmu_sc0005631.1_g000017.1 161 MKLKTILR 168
                                ***97665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MDWTNTNLRQ QQQHHLVSRP EPSFGFLYNY NFDPFPHPGM EMKHHQAMFS ETPQGSVPSS  60
MERNSHHVMS YGCNSQEKKK RLSTDQLESL ERSFQEEIKL DPDRKMKLSR DLGLQPRQIA  120
VWFQNRRARW KAKQLERLYD ALKQDYDAVS KEKQKLQDEV MKLKTILREE VARKQVSQGY  180
TEISGEETVE STSVAAIRSS NKAGGVSQHQ IAEGNYLFNV EEYNPVSPPY WGALPSYP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
178107KKKRLSTDQLESLERSFQEEIKLDPDRKMK
2126134RRARWKAKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.13e-61HD-ZIP family protein