PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0005666.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 209aa    MW: 23840.9 Da    PI: 5.9942
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0005666.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox14.56e-053867330
                               --SS--HHHHHHHHHHHHH..SSS--HHHH CS
                   Homeobox  3 kRttftkeqleeLeelFek..nrypsaeer 30
                               +R+++t+ ql++L+ l++    +yp+ e++
  Rmu_sc0005666.1_g000001.1 38 NRWAPTPPQLRILKGLYYDkgFKYPTPEQI 67
                               8****************96568****9998 PP
2Homeobox50.43.7e-16102162357
                                --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox   3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                                +R+++t+ ql++L+ l++    +yp+ e+++e+  +l    ++++++V++WFqN +a+e++
  Rmu_sc0005666.1_g000001.1 102 NRWAPTPPQLRILKGLYYDkgFKYPTPEQIQEICLHLkqygQIEDKNVFFWFQNLKARERQ 162
                                7****************96569*************************************97 PP
3Wus_type_Homeobox94.97.1e-31101163364
          Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                                ++RW+Ptp Q++iL+ ly+ +G + P+ e+iq+i  +L++yG+iedkNVf+WFQN kaRerqk
  Rmu_sc0005666.1_g000001.1 101 NNRWAPTPPQLRILKGLYYdKGFKYPTPEQIQEICLHLKQYGQIEDKNVFFWFQNLKARERQK 163
                                78***************9889*****************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    
MEPQTLQLME LQTQQQMELQ AQQPTEEGGS IQAAGSSNRW APTPPQLRIL KGLYYDKGFK  60
YPTPEQISFF INMEPRTLQL MELQTQQQIE DGGNNQAAGT NNRWAPTPPQ LRILKGLYYD  120
KGFKYPTPEQ IQEICLHLKQ YGQIEDKNVF FWFQNLKARE RQKLKEFRNV PVGGSLNLNF  180
GSTSSTDDGR SIDLNFGSRV GYGVDGSIM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.16e-22WOX family protein