PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0005705.1_g000011.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB_related

Protein Properties

Length: 949aa MW: 105301 Da PI: 5.2962

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0005705.1_g000011.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.2	1.6e-07	801	842	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +W +++ el++++++q+G++ ++ +a ++ gRt+ q+k ++ k Rmu_sc0005705.1_g000011.1 801 KWYEQDTELFYEGIEQFGSD-FSMVALLFP-GRTRDQIKFKFKK 842 799***************.*****.******99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 949 aa Download sequence
MPNIVKVTAW KIGHNILPTR DRLAARQVVL ESQICVHCNI EDESILHLCR NYSFTWEVMA 60 TNHSLNLSCF GIESDQLDAL SWLSFCSEAF AQLLFLIWGI TKERNARVWD NKITFVCDVA 120 LMSSIRLSNF IFYNSKIHGM QNTKRVFQWK APPQGWLKVN YDCAYNVGNG KATVGYLIKD 180 AVGLFLGAVG RNSVPLEIRI HVEITVGATL NMEDLDFEPT GPVRVAGRFR PKAKPKSTKI 240 ASTAAASNFP NVVTEDSIPV SSTVSDTVPS TTSVDVGEVK VTYPVGSSSA TSEILGSLEP 300 SGNNEHLCSS VPSFDGDRIT KPSESAAAVT LQPSVMVAAS NGSDGSPSVL GKSASENVDI 360 FSGLECLDNF LTQTTSGAVP ASRKSPDKVN GEKCGAPTHC SVESSAFLAC DVAETQTISD 420 YCATQDPMSC TEAAMSIEHG EIRLETKEFE ALDVVSEAPI STGRHAGKFQ PKLRVKKGKE 480 NPNIPHPEVE STILPQPAHF ETGEMDESSL CAFPPGDVHN HISPTFGDSI APNPTPNFQV 540 NAESIAETTQ LDEAVYGDAA YSEGVSARSH YSGNGKASTL SNRPQKRKGS AANEEARDGT 600 SSRKSRERLP RQQVDESGNN TNEDSFNAEN SSDYDDNEDR EHNTERRKRA PRKSKVPVSE 660 NGKPVQKRKR TKKAPDEPTK EPTKKKFSHS TRRNRRQVDK SLLEIPEDEI DPQKVPMKDL 720 IRLREYRERL EIKEAAKLKT PASDQSANDE FHMEASHNEE ENFGFEHRSS DENQVHYRDR 780 VRTSSSSFNY QSFMKKQRPA KWYEQDTELF YEGIEQFGSD FSMVALLFPG RTRDQIKFKF 840 KKEVRHNPLR INEAFRRQSK DNSKYVLVIN ELQKGAREKL ESNADESSDM AGQEEGEVAK 900 PELDKIEDME TDVAAEVQHE EPAVAEVHSP MKSDQSDDGD GFGGWDDDF

Sequence ? help Back to Top

Protein Sequence Length: 949 aa Download sequence

MPNIVKVTAW KIGHNILPTR DRLAARQVVL ESQICVHCNI EDESILHLCR NYSFTWEVMA  60
TNHSLNLSCF GIESDQLDAL SWLSFCSEAF AQLLFLIWGI TKERNARVWD NKITFVCDVA  120
LMSSIRLSNF IFYNSKIHGM QNTKRVFQWK APPQGWLKVN YDCAYNVGNG KATVGYLIKD  180
AVGLFLGAVG RNSVPLEIRI HVEITVGATL NMEDLDFEPT GPVRVAGRFR PKAKPKSTKI  240
ASTAAASNFP NVVTEDSIPV SSTVSDTVPS TTSVDVGEVK VTYPVGSSSA TSEILGSLEP  300
SGNNEHLCSS VPSFDGDRIT KPSESAAAVT LQPSVMVAAS NGSDGSPSVL GKSASENVDI  360
FSGLECLDNF LTQTTSGAVP ASRKSPDKVN GEKCGAPTHC SVESSAFLAC DVAETQTISD  420
YCATQDPMSC TEAAMSIEHG EIRLETKEFE ALDVVSEAPI STGRHAGKFQ PKLRVKKGKE  480
NPNIPHPEVE STILPQPAHF ETGEMDESSL CAFPPGDVHN HISPTFGDSI APNPTPNFQV  540
NAESIAETTQ LDEAVYGDAA YSEGVSARSH YSGNGKASTL SNRPQKRKGS AANEEARDGT  600
SSRKSRERLP RQQVDESGNN TNEDSFNAEN SSDYDDNEDR EHNTERRKRA PRKSKVPVSE  660
NGKPVQKRKR TKKAPDEPTK EPTKKKFSHS TRRNRRQVDK SLLEIPEDEI DPQKVPMKDL  720
IRLREYRERL EIKEAAKLKT PASDQSANDE FHMEASHNEE ENFGFEHRSS DENQVHYRDR  780
VRTSSSSFNY QSFMKKQRPA KWYEQDTELF YEGIEQFGSD FSMVALLFPG RTRDQIKFKF  840
KKEVRHNPLR INEAFRRQSK DNSKYVLVIN ELQKGAREKL ESNADESSDM AGQEEGEVAK  900
PELDKIEDME TDVAAEVQHE EPAVAEVHSP MKSDQSDDGD GFGGWDDDF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	666	673	QKRKRTKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	3e-32	MYB_related family protein