PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0005706.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 195aa    MW: 22054.4 Da    PI: 9.8903
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0005706.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.71e-08126166954
                                HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                 r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Rmu_sc0005706.1_g000001.1 126 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 166
                                699*****************87.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    
MMMMMQMDKI SELCGAYNDV VSDLPSSEHF PGSATSMPQY CHDQNNVSSP PPSFLNLSPS  60
TISFTNSLEQ SPQPQLASDK RASMAAMREM IFRIASMQPI HIDPESVKPP KRRNVKISKD  120
PQSVAARHRR ERISERIRIL QRLVPGGTKM DTASMLDEAI HYVKFLKSQV QTLERAAVNW  180
TLRPCWTRLS TTSSF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.15e-45bHLH family protein