PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0005767.1_g000020.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 193aa    MW: 22469 Da    PI: 10.4116
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0005767.1_g000020.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox48.31.7e-1547107357
                                --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox   3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                                +R+t+t  ql++L+el++    ++p+ e+++++  +l    ++++++V++WFqN +a+e++
  Rmu_sc0005767.1_g000020.1  47 NRWTPTLAQLRILQELYYDkvLKNPTPEQIQKICLHLqqygQIEDKNVFFWFQNLKARERQ 107
                                7****************96679*************************************97 PP
2Wus_type_Homeobox963.2e-3145108264
          Wus_type_Homeobox   2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                                +++RWtPt  Q++iL+ely+ + l++P+ e+iq+i  +L++yG+iedkNVf+WFQN kaRerqk
  Rmu_sc0005767.1_g000020.1  45 TNNRWTPTLAQLRILQELYYdKVLKNPTPEQIQKICLHLQQYGQIEDKNVFFWFQNLKARERQK 108
                                679***************987899***************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    
MEPRTLQLME LQTQQQMELQ AQQPTEEGGS NQAAGRSANT PIRPTNNRWT PTLAQLRILQ  60
ELYYDKVLKN PTPEQIQKIC LHLQQYGQIE DKNVFFWFQN LKARERQKLK EIQNVREDNL  120
PWNNKEEITR RSRLFLCSLS TVKTSLVTRR LHPRKVAHLV TIPVAQAVIT VALPFLLSSA  180
SIHPELPTWL RIV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.18e-25WOX family protein