PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0005777.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WOX

Protein Properties

Length: 388aa MW: 42910 Da PI: 6.6796

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0005777.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	38	2.8e-12	186	236	13	57
HHHHHHHH..HSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 13 eeLeelFe..knrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++L+el++ + ryp+ e+++e+ +l ++++++V++WFqN +a+ek+ Rmu_sc0005777.1_g000001.1 186 RILKELYYykELRYPTPEQIQEICLHLkqygQIEDKNVFFWFQNLKAREKQ 236 67777766436**************************************97 PP
2	Wus_type_Homeobox	69.8	4.8e-23	185	236	13	63
Wus_type_Homeobox 13 ikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerq 63 ++iL+ely+ + lr P+ e+iq+i +L++yG+iedkNVf+WFQN kaRe+q Rmu_sc0005777.1_g000001.1 185 VRILKELYYyKELRYPTPEQIQEICLHLKQYGQIEDKNVFFWFQNLKAREKQ 236 89***9889**************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence
MQGGFEDDQG EEDITKMGRI GRGNAGKSVL RPGHRSAAGM PSIQLSGQWR GKRTTGVDWI 60 RRDDLGEGRV VTKGRREVAV PAGPEPIWAE NSAHQPSARL GLAVLFGYFR LGYSMKLYIL 120 NPAHECHQNY FKNSAHGPPP IATVRALIRD KPMYGPPATA YPFRDLRKSN LLSAKFVCHS 180 ASRFVRILKE LYYYKELRYP TPEQIQEICL HLKQYGQIED KNVFFWFQNL KAREKQMMRL 240 IRDVRVGGSL DLNFGSTSSI DEGGFIDLNF GSVGSTGDDG SVDLNFGSWV GYSVGPYSSS 300 PFNPNTSTTS FDTEEGQTFM EQRGGDHQEV ETLPLFPVHC EDILGNPKTT LEEGSAYGYY 360 SDGSGGYNGD SHVSLELSLN PSGAANLA

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence

MQGGFEDDQG EEDITKMGRI GRGNAGKSVL RPGHRSAAGM PSIQLSGQWR GKRTTGVDWI  60
RRDDLGEGRV VTKGRREVAV PAGPEPIWAE NSAHQPSARL GLAVLFGYFR LGYSMKLYIL  120
NPAHECHQNY FKNSAHGPPP IATVRALIRD KPMYGPPATA YPFRDLRKSN LLSAKFVCHS  180
ASRFVRILKE LYYYKELRYP TPEQIQEICL HLKQYGQIED KNVFFWFQNL KAREKQMMRL  240
IRDVRVGGSL DLNFGSTSSI DEGGFIDLNF GSVGSTGDDG SVDLNFGSWV GYSVGPYSSS  300
PFNPNTSTTS FDTEEGQTFM EQRGGDHQEV ETLPLFPVHC EDILGNPKTT LEEGSAYGYY  360
SDGSGGYNGD SHVSLELSLN PSGAANLA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05770.1	1e-12	WOX family protein