PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0005844.1_g000004.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NF-YC
Protein Properties Length: 310aa    MW: 34710.4 Da    PI: 6.5105
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0005844.1_g000004.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC176.23.2e-551302331101
                      NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaa 81 
                                ql++fw+ q   ie+a+dfknh+lPlarikki+kadedv+misaeaPv++s+ace+f+leltlrsw+h+eenkrrtl+k+diaa
  Rmu_sc0005844.1_g000004.1 130 QLQNFWSGQyqeIEQANDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFSRACEMFVLELTLRSWNHTEENKRRTLQKNDIAA 213
                                89****988888************************************************************************ PP

                      NF-YC  82 avtrtdifdflvdivprdel 101
                                a+trtdifdflvdivpr++l
  Rmu_sc0005844.1_g000004.1 214 AITRTDIFDFLVDIVPREDL 233
                                *****************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    
MGFRLPRIAN TKKADIPRGH FVVYVGESQK KRFVVPISYL NQPSFQDLLS QAEEEFGYHH  60
PMGGITIPCS QDTFLDVTSR LGVMDQEGHG HPTTMGVPGG AGQASYGVNP YQPSQMMGLS  120
PTGSHIHQQQ LQNFWSGQYQ EIEQANDFKN HSLPLARIKK IMKADEDVRM ISAEAPVIFS  180
RACEMFVLEL TLRSWNHTEE NKRRTLQKND IAAAITRTDI FDFLVDIVPR EDLKDEVLAS  240
IPRGGNVPVV GPADGLPYYY MPAQHPPQVG APGMMVGKPV MDQNMYGQPT HPYMAQPAWP  300
QQQQPHKDSE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203209RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.33e-80NF-YC family protein