PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0005870.1_g000006.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 217aa    MW: 24550.9 Da    PI: 9.601
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0005870.1_g000006.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.14e-121146944
                               HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                     SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                               r+  +  R+  i+KK eELS+LC+++vavi+f + +
  Rmu_sc0005870.1_g000006.1 11 RKKMYRDRKMNIFKKGEELSILCGIDVAVILFQPAD 46
                               5666889************************98765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    
MELLPDQRRA RKKMYRDRKM NIFKKGEELS ILCGIDVAVI LFQPADKSTT AQPAAETWPK  60
DPTEIKRIIR RYKAKPTSSH ASSSSTSPPV IKDTTSTPSS SPCPCPSPSQ SLLGKRNYLN  120
LDLSLSGFYD SRMKILKEDK GKKKVRADNN ENINSEEGMG MQYEFQTRWN AAGKDELYKD  180
DNELRIGYDD HEAKLASLEA KREAITKRIA SLEANYV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.17e-12M-type_MADS family protein