PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0005911.1_g000011.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HD-ZIP
Protein Properties Length: 843aa    MW: 92719.4 Da    PI: 6.3596
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0005911.1_g000011.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.2e-182886357
                               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                               k  ++t+eq+e+Le++++++++ps  +r++L + +    +++ +q+kvWFqNrR +ek+
  Rmu_sc0005911.1_g000011.1 28 KYVRYTSEQVEALERVYAECPKPSSLRRQQLIRDCpilsNIEPKQIKVWFQNRRCREKQ 86
                               56789****************************************************97 PP
2START163.31.8e-511653722204
                                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEE CS
                      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevi 85 
                                +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+++sg a+ra+g+v  +++   +e+l+d++ W +++++ e+    
  Rmu_sc0005911.1_g000011.1 165 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPT-KIAEILKDRPSWFRDCRSLEVFTMF 247
                                7899******************************************************.7777777777***********9999 PP

                                CTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEE CS
                      START  86 ssg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghsk 163
                                  g  g+++l++++++a+++l+p Rdf+++Ry+ +l  g++v++++S++     p+    +++vRae+lpSg+li+p+++g+s 
  Rmu_sc0005911.1_g000011.1 248 PAGngGTIELIYTQTYAPTTLAPaRDFWTLRYTTTLDNGSFVVCERSLSGSGAGPNgasAAQFVRAEMLPSGYLIRPCEGGGSI 331
                                99999********************************************999999989999*********************** PP

                                EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                      START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204
                                +++v+h +l++++++++lr+l++s+ + ++k++ a+l++ +
  Rmu_sc0005911.1_g000011.1 332 IHIVDHLNLEAWSVPEVLRPLYESSKVVAQKRTIAALRYIR 372
                                ************************************99865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    
MAMAVAHHQH RESSSGSSIN KHLNDSGKYV RYTSEQVEAL ERVYAECPKP SSLRRQQLIR  60
DCPILSNIEP KQIKVWFQNR RCREKQRKES SRLQTVNRKL SAMNKLLMEE NDRLQKQVSQ  120
LVCENGYMRQ QLHTVPATDA SCDSVVTTPQ HSLRDANNPA GLLSIAEETL AEFLSKATGT  180
AVDWVQMPGM KPGPDSVGIF AISQSCSGVA ARACGLVSLE PTKIAEILKD RPSWFRDCRS  240
LEVFTMFPAG NGGTIELIYT QTYAPTTLAP ARDFWTLRYT TTLDNGSFVV CERSLSGSGA  300
GPNGASAAQF VRAEMLPSGY LIRPCEGGGS IIHIVDHLNL EAWSVPEVLR PLYESSKVVA  360
QKRTIAALRY IRQIAQETSG EVVYSFGRQP AVLRTFSQRL IRGFNDAVNG FNDDGWSLIN  420
CDGAEDIIMA VNSTKNLTTT NPANSFAFLG GILCAKASML LQNVPPAVLV RFLREHRSEW  480
ADFNVDAYSA ASLKSGSYAY PGMRPTRFTG GQIIMPLGHT IEHEELLEVV RLEGHSFSQE  540
EAFASRDIHL LQICSGVDEN AVGACSELVF APIDEMFPDD APLLPSGFRI IPLESKTSDS  600
NDAMATHRTL DLTSSLEVGS TTNHNAGDLN SFHNARSVLT IAFQFPFENS LQDNVASMAR  660
QYVRNVISSV QRVAMAISPS GLSPSVGPKL SPSSPEALTL ANWICQSYSY HIGAELLQPD  720
SLVGDSMLKH LWHHQDAILC CSLKSLPVFI FANQAGLDML ETTLVALQDI SLDKIFDECG  780
RKTLCADFAK LMQQGFAYLP AGICMSTMGR HISYEQAIGW KVLSGEDNSV HCLAFSFVNW  840
SFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein