PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0005919.1_g000010.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NF-YA
Protein Properties Length: 213aa    MW: 23745.6 Da    PI: 8.9001
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0005919.1_g000010.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.49.8e-33965158
                  CBFB_NFYA  1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
                               +ep+YVNaKQy++Il+RRq+Rak+e e+kl +k rkpylheSRh+hAlrR+Rg+gGrF
  Rmu_sc0005919.1_g000010.1  9 EEPVYVNAKQYHGILRRRQSRAKAELERKL-IKVRKPYLHESRHQHALRRARGCGGRF 65
                               69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    
MPLPLEMEEE PVYVNAKQYH GILRRRQSRA KAELERKLIK VRKPYLHESR HQHALRRARG  60
CGGRFLNTKK QDDNDANSSS EKTINLDANF SPKSAKSGFE CFPNDSNGNF VSSNVQQEGS  120
GSWFRTLSNG NGNGHVPSST YHTTFHDGKE GVFLGVAEGV QSPAWKNTSC AMSVRQFILG  180
FGYFVIIGTI PQEIGDGFHA VFSHEPIPLT PCY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.12e-35NF-YA family protein