PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0005966.1_g000020.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NF-YB

Protein Properties

Length: 246aa MW: 26498.5 Da PI: 5.3904

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0005966.1_g000020.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	165.8	5.7e-52	61	156	1	96
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplk 84 vreqd+++Pianv+rim+++lP +akis+daketvqecvse+isf+t+ea+++cqre+rkt++++d+lwa+++lGf++y+epl+ Rmu_sc0005966.1_g000020.1 61 VREQDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMSKLGFDNYIEPLS 144 69******************************************************************************** PP NF-YB 85 vylkkyrelege 96 ++l+kyre+eg Rmu_sc0005966.1_g000020.1 145 LFLSKYREAEGT 156 *******986 PP

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence
MDPVSGLDRF RSNNNKRQEK STTASDPVQV TDANNPDAVN VNGGNNSEAA IPRLPVAACM 60 VREQDQYMPI ANVIRIMRRI LPPHAKISDD AKETVQECVS EYISFITGEA NERCQREQRK 120 TVTAEDVLWA MSKLGFDNYI EPLSLFLSKY REAEGTERSS SLFAKCERGD AGMVEYAPVH 180 GHYGPPGFGL APQQPGMYKV GAMSGYYIGG AGGSGNEGGG AGSSSASQRQ GQSTMGGGFD 240 PFAPFK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	7e-63	NF-YB family protein