PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0005969.1_g000008.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 250aa MW: 27416.1 Da PI: 7.8994

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0005969.1_g000008.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.3	1.9e-11	52	76	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+++ rtG C++G++C+F+H+p Rmu_sc0005969.1_g000008.1 52 EPDCSYYIRTGLCRFGATCRFNHPP 76 789********************97 PP
2	zf-CCCH	39.8	7.4e-13	97	121	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ Rmu_sc0005969.1_g000008.1 97 QPECQYYLKTGTCKFGATCKFHHPR 121 799********************96 PP
3	zf-CCCH	41.2	2.8e-13	157	183	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ Rmu_sc0005969.1_g000008.1 157 PGEPLCIFYSRYGICKFGPSCKFDHPM 183 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence
MDFDAGIPMS RASAAPVTDD ASSLSPQDAM WQMNLRSSES MEPGPYPERA GEPDCSYYIR 60 TGLCRFGATC RFNHPPNRKL AIATARMKGE FPERIGQPEC QYYLKTGTCK FGATCKFHHP 120 RDKAGIAGRV AMFHHPRERL IPAPDCVLSP IGLPLRPGEP LCIFYSRYGI CKFGPSCKFD 180 HPMGIFTYNL SASSSAESPA RRLLGSTSGT TSLNLSSEGL VEAGSTKPRR LSLSEPRQMP 240 SADENIDTEE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-77	C3H family protein