PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0005971.1_g000017.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 159aa    MW: 18761.6 Da    PI: 9.0323
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0005971.1_g000017.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS130.61.7e-403157221374
                       GRAS 221 eserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae 304
                                +s+rd vLkl+k+++P+++++  ++  hn++ F++rf eal +y a+fd +ea+ p+e++  +++E+ + gr+i+n++aceg e
  Rmu_sc0005971.1_g000017.1   3 NSPRDVVLKLIKNINPNLFIHGISNGTHNTPFFATRFREALLHYYAVFDVFEATNPHEENRWMMLEKDFHGRDIMNIIACEGVE 86 
                                4689**************************************************9***************************** PP

                       GRAS 305 rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                r+er et++kW+ r  +aG+k++pl+ +  k+ak l + ++  + + ++e+ ++++ gWk+r L+++S+W+
  Rmu_sc0005971.1_g000017.1  87 RVERPETYKKWQIRNVRAGLKQLPLDRELLKKAKKLSELMGyHNDFGLDEDGHWMLHGWKGRILTALSFWK 157
                                ***************************************999999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    
MENSPRDVVL KLIKNINPNL FIHGISNGTH NTPFFATRFR EALLHYYAVF DVFEATNPHE  60
ENRWMMLEKD FHGRDIMNII ACEGVERVER PETYKKWQIR NVRAGLKQLP LDRELLKKAK  120
KLSELMGYHN DFGLDEDGHW MLHGWKGRIL TALSFWKPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.15e-59GRAS family protein