PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0005990.1_g000003.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 328aa    MW: 36574.4 Da    PI: 4.5214
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0005990.1_g000003.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.58.7e-152774148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               +g W++eEde+l ++    G g+W+ +ar  g+ R++k+c++rw +yl
  Rmu_sc0005990.1_g000003.1 27 KGLWSPEEDEKLMRYMLNNGQGCWSDVARNAGLERCGKSCRLRWINYL 74
                               678*******************************************97 PP
2Myb_DNA-binding48.91.5e-1580123146
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                rg+++++E++l+++ + +lG++ W+ Ia++++ gRt++++k++w++
  Rmu_sc0005990.1_g000003.1  80 RGAFSPQEEDLIIHFHSLLGNR-WSQIAARLP-GRTDNEIKNFWNS 123
                                89********************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    
MRKPEPSVVS STGKNNKNNS MSNKLRKGLW SPEEDEKLMR YMLNNGQGCW SDVARNAGLE  60
RCGKSCRLRW INYLRPDLKR GAFSPQEEDL IIHFHSLLGN RWSQIAARLP GRTDNEIKNF  120
WNSTIKKRLK VLSSSSSSTA SPNASDSSSD QPNNKDFFTT AGGGGGFMNI IPQSMMPIYG  180
DSSMQSTSLI NHMFDPFPMV EHGGYYNNGN PCTAQIGSSV GSGADDCGFE ENIEAFGNVN  240
IGVEEDIFVP PLESVSTTDQ DQNLKTETIF YDNNNYYSNS NNIIKGENMI GVGNYFEDDQ  300
DQGLTMGEWD LEDLMKDVSS FPFLDYQS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.12e-74MYB family protein