PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0006000.1_g000009.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family TCP
Protein Properties Length: 423aa    MW: 44588.2 Da    PI: 7.2894
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0006000.1_g000009.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1294.9e-40652412116
                        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasn 84 
                                ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s+
  Rmu_sc0006000.1_g000009.1  65 PPKRTSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSS 148
                                789******************************************************************999866666666664 PP

                        TCP  85 sssg.............................................................kaaksaakskksqksaasa 107
                                 s++                                                             +a+++   + ++++sa+++
  Rmu_sc0006000.1_g000009.1 149 MSAPshlrtsgyfnptnsssnllfgggasqlmeeqqrgrvlfpgvdlspssmllnfnsgnvnamlEAKQEMRDQGNNNTSATTT 232
                                444444555566666666666777777777777777777777777777777777777666666644444444666666666666 PP

                        TCP 108 lnlakesra 116
                                l+l++ sr+
  Rmu_sc0006000.1_g000009.1 233 LDLDHMSRE 241
                                666666664 PP
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    
MEGDENGIRI RPNFPLQFLD KRKEEEAAAS SSSYGGAEPA GSSKAVVVAR STSDVSSIQE  60
KKPAPPKRTS TKDRHTKVDG RGRRIRMPAT CAARVFQLTR ELGHKSDGET IEWLLQQAEP  120
AVIAATGTGT IPANFTSLNI SLRSSGSSMS APSHLRTSGY FNPTNSSSNL LFGGGASQLM  180
EEQQRGRVLF PGVDLSPSSM LLNFNSGNVN AMLEAKQEMR DQGNNNTSAT TTLDLDHMSR  240
EGSSIGRKRR PDVQDLLSSS SSHTSHSQLG NYMLQSSTGS IPASQSTIPA TFWMVANNPS  300
SNNSNQGQAG NMSGGGGGGA HLHHQDPPMW TFPTTVNGNH GLHFMNFAPP MAILPSQVQL  360
GTSVLSTGGG GGGGAMADSH LGMLAALNAY RPILSGGAPV NGQHPSDDAD EGQHDEHSNA  420
SQR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47620.15e-56TCP family protein