PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0006003.1_g000019.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 301aa    MW: 35210.5 Da    PI: 6.635
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0006003.1_g000019.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM56.11.3e-17301652128
                        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykv.ePwdLpk........kvkaeekewyfFskrdkkyatgkrkn 75 
                                p+ +rF+Ptd+el+ +yL+ +++  ++  + ++ ++ d y   eP+   +        kv + ek +yfF++r++ +at kr  
  Rmu_sc0006003.1_g000019.1  30 PVRVRFRPTDHELLGYYLHSRISMGDHFQSYFVFDCpDFYGDnEPRFVWQmydnakskKV-EVEKTLYFFTHRRTLSATAKRFD 112
                                7779*****************998885444556666599975489555322344433222.134467***************** PP

                        NAM  76 ratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                ++++ g+W+ + +++ v ++ ++ ++g+k+ + +  g +++ ++  W+m+ey++
  Rmu_sc0006003.1_g000019.1 113 QKVAFGTWSGQYSKQVVDQEgDSVVIGIKREFRYDGGCDSR-HNKAWLMQEYQI 165
                                *********9988776666667778********98666655.7889******86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    
MVTLRSRLPI HSNKQDFKNR SLTSKESGLP VRVRFRPTDH ELLGYYLHSR ISMGDHFQSY  60
FVFDCPDFYG DNEPRFVWQM YDNAKSKKVE VEKTLYFFTH RRTLSATAKR FDQKVAFGTW  120
SGQYSKQVVD QEGDSVVIGI KREFRYDGGC DSRHNKAWLM QEYQIIDDDS DIVLCALRKN  180
PKKAPLAERS NVVEKTKVND KKRKSIVDQP GKPKAKKQKK EESYDQEQEG SSSVDQMKVE  240
ETNYELDQDH GLLQVVLPYP FVDDQDYYYP ELYPKLCVDD KADFSTIDEL LAQTPTWYEG  300
N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1201220KKRKSIVDQPGKPKAKKQKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.11e-10NAC family protein