PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0006031.1_g000012.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 587aa    MW: 66017.3 Da    PI: 4.7449
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0006031.1_g000012.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS278.32.3e-852205851374
                       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl. 83 
                                lve Ll+ Ae v  ++ e+a++lL   + l+s +g+p++R+++yf eAL++++ r++ ++ ++ ++ + ++  ++++ ++  l 
  Rmu_sc0006031.1_g000012.1 220 LVEFLLASAEKVGYQQYERASKLLDLCERLCSDTGNPVERVVFYFCEALREKIDRETGRTTQKKQSFDIDKAMMITNETS--La 301
                                57889**************************************************4444444444444433333333333..14 PP

                       GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLak 167
                                 ++  P+ ++++++  q I+e v ++++vH+iD++i  G+QW  L+qaLasR+ +   l+i +vg     ske++++tg+ L++
  Rmu_sc0006031.1_g000012.1 302 CHNKIPFCQIAQFAGIQGIVEKVVEAKKVHVIDLEIRSGVQWTVLMQALASRDFPLEFLKISAVGT----SKETIQNTGKWLES 381
                                67888*************************************************************....************** PP

                       GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse 251
                                fA+++++pf+f+++++ ++ dl+ ++++++++E++aV   + l +++ ++  les    ++k++k++ P v vv+e ea+hns+
  Rmu_sc0006031.1_g000012.1 382 FAKTMNLPFSFKMVLVPDMLDLREDMFKLDSEETVAVYTEFVLRSMVPQPDRLES----LMKVIKNIHPSVTVVTEVEANHNSP 461
                                **************999*****************************977777777....************************* PP

                       GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335
                                 F++rf+eal ++sa+fd++e+ + +++  r+++E +++g+ i+n+va+eg+er+ r+ +   Wr+ + + G+++++ls++   
  Rmu_sc0006031.1_g000012.1 462 VFVTRFIEALFFFSAFFDCVETCIEQTEPIRKSLESQYFGNGIKNIVATEGEERKIRNVKIDVWRAFFARYGMEEMELSSSSLY 545
                                ************************************************************************************ PP

                       GRAS 336 qaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                qa+l+ ++++ ++  +++ + ++l+ gWk+ pL s+S W+
  Rmu_sc0006031.1_g000012.1 546 QAELVAKNFPcGNSCTINMDGKTLIAGWKGTPLQSLSLWK 585
                                **********9999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    
MANTMSSFGE FNFGGVQDKL GSTVENMAVE SIGGKQVYEA ENWGGFGSLC SDYGIYGNGF  60
SDFTKYQQQD QQQQPQLISD YGVFDDMQFQ FGALSPPLQA CLEEIAKLES IPTLVPHVEP  120
PKKELKRDSF SVAGLDLLNN YGSGFKRLNG ERIVEPNPYP GYTEVKSSKL STEEIVRVAG  180
ARFIRTASQV SPSDIPSMLS HPFELSFAGL SNEESRDVEL VEFLLASAEK VGYQQYERAS  240
KLLDLCERLC SDTGNPVERV VFYFCEALRE KIDRETGRTT QKKQSFDIDK AMMITNETSL  300
ACHNKIPFCQ IAQFAGIQGI VEKVVEAKKV HVIDLEIRSG VQWTVLMQAL ASRDFPLEFL  360
KISAVGTSKE TIQNTGKWLE SFAKTMNLPF SFKMVLVPDM LDLREDMFKL DSEETVAVYT  420
EFVLRSMVPQ PDRLESLMKV IKNIHPSVTV VTEVEANHNS PVFVTRFIEA LFFFSAFFDC  480
VETCIEQTEP IRKSLESQYF GNGIKNIVAT EGEERKIRNV KIDVWRAFFA RYGMEEMELS  540
SSSLYQAELV AKNFPCGNSC TINMDGKTLI AGWKGTPLQS LSLWKFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.16e-39GRAS family protein