PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0006047.1_g000015.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 174aa    MW: 19538.5 Da    PI: 9.9284
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0006047.1_g000015.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.51.8e-1662160299
                                EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-....TTHHHHHHHHT--TT-E CS
                         B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvlt....kGWkeFvkangLkegDf 79 
                                + + +++++l++  + ++ +fa++h        s +l+l++++ r+W  +li+  + ++ v++    +GWk F ++n+L+egD+
  Rmu_sc0006047.1_g000015.1  62 IMIKMTAYYLRRE-MFISASFATKHlcR--AGASCDLSLQTPDMRTWIAELIVYETTESRVFAkikgAGWKAFKEENHLEEGDV 142
                                5667899999998.9**********662..445679***************8855555544444777***************** PP

                                EEEEE-SSSEE..EEEEE-S CS
                         B3  80 vvFkldgrsefelvvkvfrk 99 
                                +v++l+++ +f  +v++fr+
  Rmu_sc0006047.1_g000015.1 143 CVLELIEECKF--RVSIFRA 160
                                ******98888..9***997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    
MGIDSTRTDG IPKRKRTRAH GGMPNAYLKA ARAISNSSGS SGNEHLNVLS TANSFKSDKP  60
FIMIKMTAYY LRREMFISAS FATKHLCRAG ASCDLSLQTP DMRTWIAELI VYETTESRVF  120
AKIKGAGWKA FKEENHLEEG DVCVLELIEE CKFRVSIFRA RVKINELSEA GRPR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-08B3 family protein