PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0006058.1_g000005.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Protein Properties

Length: 601aa MW: 65852.7 Da PI: 5.6828

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0006058.1_g000005.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53.7	3.9e-17	56	142	1	96
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f k +++s+ + +l+lp++f++ h +++ t+tled++g+++e k+ +k+ l++GWk+F++a++L+ D++vF+ Rmu_sc0006058.1_g000005.1 56 FMKSMIRSNISVCFMLTLPRRFCNLHlP--LHGTATITLEDKEGKEYETKFLADKRT----LSGGWKGFCQAKDLRLDDVLVFQ 133 78999999999999*******88853..447789***********555554....9******************** PP E-SSSEE..EEEE CS B3 84 ldgrsefelvvkv 96 l+++ +f kv Rmu_sc0006058.1_g000005.1 134 LVSHLKF----KV 142 9875333....33 PP

Sequence ? help Back to Top
Protein Sequence Length: 601 aa Download sequence
MIFEQEVSSD PQRNGGCKRS RTNPSMSWHF GHPEESSVKS QVREIPENLE AECPFFMKSM 60 IRSNISVCFM LTLPRRFCNL HLPLHGTATI TLEDKEGKEY ETKFLADKRT LSGGWKGFCQ 120 AKDLRLDDVL VFQLVSHLKF KVYRVRPEYD PSEDDVDAAF VLLKMSTSEQ TLFEENPANL 180 TNYSFVDDDE SEDQITEIRN LAPITVVHLI RPGQAADFED VRSSENFATM APPHSPMGHS 240 TQNNAALLSN LSIGPHFTQN EIETPRRRHQ PSIPDPKTIL VTGNKGRGST SLDPRPPITD 300 LWCSTQDLRR STSGARPSSP ALDSGQCGVT SQTHKELERE LSESQGYGYS CGLGSGSGTK 360 SGSLALGVTG VATDKGLGVV RGVNGAKDGG GLKRHGGLLA VVGVAEGALD VCLAFCRGDN 420 GLGVVRGVNG AKDGGGLKRH GGLLTVVGVA EGALDVVDWA IGELSLGLWS TLTADHRCPS 480 HFSHQSSPNE HGQEKYNIGQ FGNPLGGDVA ELLRALCLSQ EFMNLEENFF QYFPEDEGHT 540 TFPELPVPTT STPFDDFTLH PVEQHRGTLE ETTQNGFRPW KWKSPLSPIP KRVSENPFPY 600 Y

Sequence ? help Back to Top

Protein Sequence Length: 601 aa Download sequence

MIFEQEVSSD PQRNGGCKRS RTNPSMSWHF GHPEESSVKS QVREIPENLE AECPFFMKSM  60
IRSNISVCFM LTLPRRFCNL HLPLHGTATI TLEDKEGKEY ETKFLADKRT LSGGWKGFCQ  120
AKDLRLDDVL VFQLVSHLKF KVYRVRPEYD PSEDDVDAAF VLLKMSTSEQ TLFEENPANL  180
TNYSFVDDDE SEDQITEIRN LAPITVVHLI RPGQAADFED VRSSENFATM APPHSPMGHS  240
TQNNAALLSN LSIGPHFTQN EIETPRRRHQ PSIPDPKTIL VTGNKGRGST SLDPRPPITD  300
LWCSTQDLRR STSGARPSSP ALDSGQCGVT SQTHKELERE LSESQGYGYS CGLGSGSGTK  360
SGSLALGVTG VATDKGLGVV RGVNGAKDGG GLKRHGGLLA VVGVAEGALD VCLAFCRGDN  420
GLGVVRGVNG AKDGGGLKRH GGLLTVVGVA EGALDVVDWA IGELSLGLWS TLTADHRCPS  480
HFSHQSSPNE HGQEKYNIGQ FGNPLGGDVA ELLRALCLSQ EFMNLEENFF QYFPEDEGHT  540
TFPELPVPTT STPFDDFTLH PVEQHRGTLE ETTQNGFRPW KWKSPLSPIP KRVSENPFPY  600
Y

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	2e-23	B3 family protein