PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0006101.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 454aa MW: 50890.5 Da PI: 4.4244

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0006101.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	49.7	1.2e-15	8	58	1	51
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkv 51 +p+G+rFhP+deel+++yL++k + k+ +++++i+e+d++k+eP++Lp k Rmu_sc0006101.1_g000001.1 8 VPKGYRFHPSDEELLSHYLEQKNKCKDSQITTIIPEIDVCKHEPRELPGKP 58 589*************************999************9432 PP

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence
MCCSGFTVPK GYRFHPSDEE LLSHYLEQKN KCKDSQITTI IPEIDVCKHE PRELPGKPSP 60 EPEHHQFQLL MIMIRKFMCI VLHFCRTGVQ KGGKSEAETG GGMITEEEEY LTLKELRDAL 120 QIPIGNPHEF EVQGTQTDPC PIDKNDLSTT VEGQPDRSNS SDMIKELLDD PENLDSLFLP 180 PAPPQLHNSP TTVEGQPDRS NSSDMIKELL DDPEKLDSLF RQPAPPQLHN SPMYTTNVHN 240 DECRKRTCPF EDKNPSLTKK NIISTNFLFV MKQLLDDPEN LDSLFHQPAP PQLHNSPMYT 300 TNVHNDECRK RTYPFEDNNP SLTKKNIIST NDDDELVSNT ACSSENQAAN MIPEGYSQLG 360 ANLGSEFDSF LPNDYDYTLP SINGGLRDFS NDNNFIELDD LLSSYEGIDS SLAQFLHTVI 420 DGGRGVTSDR NTEVVHGSVN DYSAVAIGAT LQRS

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence

MCCSGFTVPK GYRFHPSDEE LLSHYLEQKN KCKDSQITTI IPEIDVCKHE PRELPGKPSP  60
EPEHHQFQLL MIMIRKFMCI VLHFCRTGVQ KGGKSEAETG GGMITEEEEY LTLKELRDAL  120
QIPIGNPHEF EVQGTQTDPC PIDKNDLSTT VEGQPDRSNS SDMIKELLDD PENLDSLFLP  180
PAPPQLHNSP TTVEGQPDRS NSSDMIKELL DDPEKLDSLF RQPAPPQLHN SPMYTTNVHN  240
DECRKRTCPF EDKNPSLTKK NIISTNFLFV MKQLLDDPEN LDSLFHQPAP PQLHNSPMYT  300
TNVHNDECRK RTYPFEDNNP SLTKKNIIST NDDDELVSNT ACSSENQAAN MIPEGYSQLG  360
ANLGSEFDSF LPNDYDYTLP SINGGLRDFS NDNNFIELDD LLSSYEGIDS SLAQFLHTVI  420
DGGRGVTSDR NTEVVHGSVN DYSAVAIGAT LQRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33060.1	2e-11	NAC family protein