PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0006170.1_g000002.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TCP

Protein Properties

Length: 447aa MW: 48132.9 Da PI: 6.5649

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0006170.1_g000002.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	81.4	2.3e-25	97	172	2	70
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssa 70 + +kd hsk++T++g+Rd vRl a++ ++f+dLqd+L +d++s +++WL+++ak +i++l+ + +s+ Rmu_sc0006170.1_g000002.1 97 TSQKDCHSKVCTAKGPRDHHVRLAAHTTIQFYDLQDQLAYDRPSLAVDWLIKKAKSSIDKLPPWnpnsisvqT-TSS 172 679***********************************************************99555554421.111 PP
2	TCP	81.7	1.8e-25	289	360	2	66
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......s 66 + +kd hsk++T++g+Rd vRl a++ ++f+dLqd+L +d++s +++WL++++k++i++l++ + Rmu_sc0006170.1_g000002.1 289 TSQKDCHSKVCTAKGPRDHHVRLAAHTTIQFYDLQDQLAYDRPSLAVDWLIKKSKASIDKLPRWnpnsisvQ 360 679***********************************************************9944333221 PP

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence
MEKINHQSPT PKSKHVMTDD STRSTTSSRA LTPTMTARSQ PRSSAMSSRP WAPTSPTTSS 60 AAPLLQCVMV DLGRIRTASS STASEIVEAQ GHILRATSQK DCHSKVCTAK GPRDHHVRLA 120 AHTTIQFYDL QDQLAYDRPS LAVDWLIKKA KSSIDKLPPW NPNSISVQTT SSPTVPISAA 180 QDTQNASLHF SMVEALSSLF ANWRGAMVGS SRVAELVNQN SLNFLQTGEV AGEDGVEVVL 240 HVGNDGEDGG VGLELGSEER TRVVVAKSLA AGMNSDEIVE AQGHILRATS QKDCHSKVCT 300 AKGPRDHHVR LAAHTTIQFY DLQDQLAYDR PSLAVDWLIK KSKASIDKLP RWNPNSISVQ 360 TTSSLTVPIS AAQDTQNASL YFSMVEALSS LFSNWRGAMV GSSRVVELVN QNSLNFLQTG 420 EVAGEDGVEV VLHVGNDGED GGVGLEL

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence

MEKINHQSPT PKSKHVMTDD STRSTTSSRA LTPTMTARSQ PRSSAMSSRP WAPTSPTTSS  60
AAPLLQCVMV DLGRIRTASS STASEIVEAQ GHILRATSQK DCHSKVCTAK GPRDHHVRLA  120
AHTTIQFYDL QDQLAYDRPS LAVDWLIKKA KSSIDKLPPW NPNSISVQTT SSPTVPISAA  180
QDTQNASLHF SMVEALSSLF ANWRGAMVGS SRVAELVNQN SLNFLQTGEV AGEDGVEVVL  240
HVGNDGEDGG VGLELGSEER TRVVVAKSLA AGMNSDEIVE AQGHILRATS QKDCHSKVCT  300
AKGPRDHHVR LAAHTTIQFY DLQDQLAYDR PSLAVDWLIK KSKASIDKLP RWNPNSISVQ  360
TTSSLTVPIS AAQDTQNASL YFSMVEALSS LFSNWRGAMV GSSRVVELVN QNSLNFLQTG  420
EVAGEDGVEV VLHVGNDGED GGVGLEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.2	4e-35	TCP family protein