PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0006193.1_g000003.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 537aa    MW: 58709.8 Da    PI: 6.1406
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0006193.1_g000003.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS427.21.3e-1301475121374
                       GRAS   1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalk 82 
                                lv+lL++cAe v+ gdl+la +++++++ l  + ++g  + ++a yf  AL++r++          ++  ++  +  ++   ++
  Rmu_sc0006193.1_g000003.1 147 LVQLLVTCAESVQRGDLALAGSIIETMQALltRVNTGCGIGKVAGYFIDALSRRVFT--------PQSVGSDGGSAHQNELLYH 222
                                689**************************977888899******************9........2222222223555567889 PP

                       GRAS  83 lfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLa 166
                                +f+e++P+lkf+h+taNqaIlea++g+++vH+iDf++++GlQWpaL+qaLa Rp+gpp lR+Tg+g+p+++ +++l+e+g rLa
  Rmu_sc0006193.1_g000003.1 223 YFYEACPYLKFAHFTANQAILEAFHGHDCVHVIDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLA 306
                                9*********************************************************************************** PP

                       GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250
                                ++A++++v+f f+ ++a+rled+++++L+v p+Ea+aVn+++qlhrll ++ + +s+++ +L  +++l+Pk+v+vveqeadhn+
  Rmu_sc0006193.1_g000003.1 307 ELARSVNVRFAFRGVAASRLEDVKPWMLQVGPKEAVAVNSIMQLHRLLGSDSNRNSPIEMMLGWIRNLNPKIVTVVEQEADHNK 390
                                ************************************************************************************ PP

                       GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334
                                + Flerf+eal+yys +fdslea    + + ++++ +++++rei+nvv+ceg +r+erhe l+kWr rle aGF+p++l+++a 
  Rmu_sc0006193.1_g000003.1 391 AGFLERFTEALYYYSNMFDSLEAC--GAMQPDKTLAEMYIQREICNVVCCEGLARVERHEPLSKWRIRLELAGFSPLHLGSNAF 472
                                *********************998..4567788888899********************************************* PP

                       GRAS 335 kqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                kqa++ll  ++ +gyrvee++g+l+lgW++rpL+++SaW+
  Rmu_sc0006193.1_g000003.1 473 KQASMLLTLFSAEGYRVEEKEGCLTLGWHSRPLIAASAWQ 512
                                ***************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    
MEPYGNSGVV SSSASSSSSS SAASITKPHD MDGYLAEAGY KVRSSDLRHV AQRLERLENV  60
MVNSPNDLAH FASDAVIYNP SDLASWVDSL LSASDLDFPG VIINNHHTAL PTADTWTEIP  120
PIPSAAAPPQ NHHQVTAVME EDSGIRLVQL LVTCAESVQR GDLALAGSII ETMQALLTRV  180
NTGCGIGKVA GYFIDALSRR VFTPQSVGSD GGSAHQNELL YHYFYEACPY LKFAHFTANQ  240
AILEAFHGHD CVHVIDFNLM HGLQWPALIQ ALALRPGGPP LLRLTGIGPP SPDGRDSLRE  300
IGLRLAELAR SVNVRFAFRG VAASRLEDVK PWMLQVGPKE AVAVNSIMQL HRLLGSDSNR  360
NSPIEMMLGW IRNLNPKIVT VVEQEADHNK AGFLERFTEA LYYYSNMFDS LEACGAMQPD  420
KTLAEMYIQR EICNVVCCEG LARVERHEPL SKWRIRLELA GFSPLHLGSN AFKQASMLLT  480
LFSAEGYRVE EKEGCLTLGW HSRPLIAASA WQVMPLPEAT ATATNPLGIV NHSANHV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-136GRAS family protein