PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0006218.1_g000028.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 1935aa MW: 215736 Da PI: 6.8028

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0006218.1_g000028.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	36.9	1.1e-11	9	55	2	49
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk 49 ppGfrF+P+d e++ +yL +k+ g+++ + +vi++vd+y+ P +Lp Rmu_sc0006218.1_g000028.1 9 PPGFRFQPSDAEIIGFYLINKILGRPNAF-DVISTVDVYSDSPDQLPL 55 89**********************777.9*************93 PP

Sequence ? help Back to Top
Protein Sequence Length: 1935 aa Download sequence
MPSTCPCPPP GFRFQPSDAE IIGFYLINKI LGRPNAFDVI STVDVYSDSP DQLPLDPHRT 60 SPPFASLNFS SKSIPLSPKL FTSLPLSLSL QQNPNSIRNT PRFPLIYNPC HSPPPSLHAL 120 APPFVAPSPV NLPMSYPVSS SSGAGASHQG IRLSNTTHSE VAPCLPLPSL PVFCGASDQD 180 LRLFDEPSRS SARLNYYDAA QASRIADLLR ATDVSYLNLR EDTAAVQYGY VQPMELHDEV 240 LQYNPEAFQY TTPGPIMGQV PGSSTVPDKK PFVPIIPITR TSERDYGATH NNQLNYTPPN 300 DISIASSRKP KAKRKASDGV TSSVGSDPVA SQEATVGCFC ELVEDFCGRA EIFSEDRDEA 360 QWLSMPLSDL RMLANEIMSL RAKRLLHMVP VDTFVRLLRI LDHQIHGAEG LSINEQSDSN 420 GVSSINCALE SIHAALAVMA HNQMPKQLYK EEIIERILEF SRHQIMDVMC ACDPSYRALH 480 RPSENGTLEV EEDEILDAET GSASKRRRST KTVKVQKSSY NRVSAAVNNI LQKMCTILGL 540 LKDLLLIEKL SDSCILQLLK TSFTTFMVDN IQLLQLKAIG LISGIYYSYT QHRTYVIDEL 600 LQLLWKLPFS KRALRSYHLP DEEQTQIQMI TALLIQLVHC SANLPAPLRQ DSSVNSILEV 660 SDNADYPIKG LEAAQAACCH FWKGVLQRFA NVKNQEASEF KVMMENLVTD LLTTLNLPEY 720 PASAPILEVL CVLLLANAGV KSKDVAARSM AIDLLGTIAA RLKRDSLLRS RSKFWILQEL 780 VSGDAADQTY PKDVCSACLD GRVEKTFFVC QGCQRMFHAD CMGVREHEVP NQSWHCQICL 840 CRKQLLVLQS YCKSQYKDDG FKDHKSSGRK TEVTFSITKL EIVQQLLLNY LQDTASADDV 900 HLFIRWLYVC LWYKDDPPKS QQKFIYYLAR LNSKAIVRDS GTVFSLLTRD LIKQITLVLG 960 RNTSFARGFD KILHLLLASL RENSPVIRAK ALRAVSIVVE ADPEVLGDKR VQPAVEGRFC 1020 DSAISVREAA LELVGRHIAS HPDVGLKYFE KVAERIKDTG VSVRKRSIKI IRDMCVSNGD 1080 FSEFTSACIA IISRIGDDES SIQDLVCKTF YEFWFEEHTG SHTQFFGDDS SVPLEVAKKT 1140 EQIVEMLRRM PTPHHLVTVI KRNLALDFFP QAAKAAGINP VLLASVRNRC ELMCKFLLER 1200 ILQVEEMNIQ EVEMCALPYV QVLHAFCVVD PTLCAPVSNP SQFVVTLQPY LKSQDDNRVV 1260 AKLLESIIFI IDSVLPLVRK LPQNVLEELE QDLKSMIVRH SFLSVVHACI KCLCAVSKVA 1320 GKGAAVVEYL IQVFYKRLDA EEVDNQQKAG RSLFCLGMLI RYGNSLLCYS DQTIDVASSL 1380 GLFKRYLLMD DFFLKARSLQ ALGFVLIARP EFMLEKDIGK ILEETFSSSS DVRLKMQALQ 1440 NMYDYLLDAE TQLGTDTTSN NVADYSVEGG NAVPVAAGAG DTNICGGIVQ LYWDNILERC 1500 LDFNEQIRSS ALKIVEVVLR QGLVHPITCV PFLIALETDP LEANSTLAHH LLMNMNEKYP 1560 SFFESRLGDG LQMSFGFIQS IRPSTERENT KPPSKASGNA KGKVDDVSFA QARLGVSRIY 1620 KLIRANRVSR NKFMSSIVRK FDNPIWTTSV VPFLMYCTEI LALLPFTTPD EPLYLVYAIN 1680 RVIQVKAGQL EAKLKALTLH LLQRGAPRGN GVIKEDPAAP PFTRGMASVD LNGTIEPESA 1740 YYMAAMDLNG TIEQDPADQS VSNQDTVLEA KMHGKGSVSS SGISIDDVQI IQADCLAAIA 1800 LQLLLKLKRH LKIVYSLNDA RCQAFSPTDP IKPGDAFSKQ SIPFDVSDTH TNLPGTYQEL 1860 VQRYQEFKNA LKDDTVDFST YTANLKRKRP APRKGRKSGV RDDEDDNDDD EDWSGGARRL 1920 SYSGRRGGHS RSRQR

Sequence ? help Back to Top

Protein Sequence Length: 1935 aa Download sequence

MPSTCPCPPP GFRFQPSDAE IIGFYLINKI LGRPNAFDVI STVDVYSDSP DQLPLDPHRT  60
SPPFASLNFS SKSIPLSPKL FTSLPLSLSL QQNPNSIRNT PRFPLIYNPC HSPPPSLHAL  120
APPFVAPSPV NLPMSYPVSS SSGAGASHQG IRLSNTTHSE VAPCLPLPSL PVFCGASDQD  180
LRLFDEPSRS SARLNYYDAA QASRIADLLR ATDVSYLNLR EDTAAVQYGY VQPMELHDEV  240
LQYNPEAFQY TTPGPIMGQV PGSSTVPDKK PFVPIIPITR TSERDYGATH NNQLNYTPPN  300
DISIASSRKP KAKRKASDGV TSSVGSDPVA SQEATVGCFC ELVEDFCGRA EIFSEDRDEA  360
QWLSMPLSDL RMLANEIMSL RAKRLLHMVP VDTFVRLLRI LDHQIHGAEG LSINEQSDSN  420
GVSSINCALE SIHAALAVMA HNQMPKQLYK EEIIERILEF SRHQIMDVMC ACDPSYRALH  480
RPSENGTLEV EEDEILDAET GSASKRRRST KTVKVQKSSY NRVSAAVNNI LQKMCTILGL  540
LKDLLLIEKL SDSCILQLLK TSFTTFMVDN IQLLQLKAIG LISGIYYSYT QHRTYVIDEL  600
LQLLWKLPFS KRALRSYHLP DEEQTQIQMI TALLIQLVHC SANLPAPLRQ DSSVNSILEV  660
SDNADYPIKG LEAAQAACCH FWKGVLQRFA NVKNQEASEF KVMMENLVTD LLTTLNLPEY  720
PASAPILEVL CVLLLANAGV KSKDVAARSM AIDLLGTIAA RLKRDSLLRS RSKFWILQEL  780
VSGDAADQTY PKDVCSACLD GRVEKTFFVC QGCQRMFHAD CMGVREHEVP NQSWHCQICL  840
CRKQLLVLQS YCKSQYKDDG FKDHKSSGRK TEVTFSITKL EIVQQLLLNY LQDTASADDV  900
HLFIRWLYVC LWYKDDPPKS QQKFIYYLAR LNSKAIVRDS GTVFSLLTRD LIKQITLVLG  960
RNTSFARGFD KILHLLLASL RENSPVIRAK ALRAVSIVVE ADPEVLGDKR VQPAVEGRFC  1020
DSAISVREAA LELVGRHIAS HPDVGLKYFE KVAERIKDTG VSVRKRSIKI IRDMCVSNGD  1080
FSEFTSACIA IISRIGDDES SIQDLVCKTF YEFWFEEHTG SHTQFFGDDS SVPLEVAKKT  1140
EQIVEMLRRM PTPHHLVTVI KRNLALDFFP QAAKAAGINP VLLASVRNRC ELMCKFLLER  1200
ILQVEEMNIQ EVEMCALPYV QVLHAFCVVD PTLCAPVSNP SQFVVTLQPY LKSQDDNRVV  1260
AKLLESIIFI IDSVLPLVRK LPQNVLEELE QDLKSMIVRH SFLSVVHACI KCLCAVSKVA  1320
GKGAAVVEYL IQVFYKRLDA EEVDNQQKAG RSLFCLGMLI RYGNSLLCYS DQTIDVASSL  1380
GLFKRYLLMD DFFLKARSLQ ALGFVLIARP EFMLEKDIGK ILEETFSSSS DVRLKMQALQ  1440
NMYDYLLDAE TQLGTDTTSN NVADYSVEGG NAVPVAAGAG DTNICGGIVQ LYWDNILERC  1500
LDFNEQIRSS ALKIVEVVLR QGLVHPITCV PFLIALETDP LEANSTLAHH LLMNMNEKYP  1560
SFFESRLGDG LQMSFGFIQS IRPSTERENT KPPSKASGNA KGKVDDVSFA QARLGVSRIY  1620
KLIRANRVSR NKFMSSIVRK FDNPIWTTSV VPFLMYCTEI LALLPFTTPD EPLYLVYAIN  1680
RVIQVKAGQL EAKLKALTLH LLQRGAPRGN GVIKEDPAAP PFTRGMASVD LNGTIEPESA  1740
YYMAAMDLNG TIEQDPADQS VSNQDTVLEA KMHGKGSVSS SGISIDDVQI IQADCLAAIA  1800
LQLLLKLKRH LKIVYSLNDA RCQAFSPTDP IKPGDAFSKQ SIPFDVSDTH TNLPGTYQEL  1860
VQRYQEFKNA LKDDTVDFST YTANLKRKRP APRKGRKSGV RDDEDDNDDD EDWSGGARRL  1920
SYSGRRGGHS RSRQR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10480.1	4e-09	NAC family protein