PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0006233.1_g000030.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

HB-other

Protein Properties

Length: 1536aa MW: 172177 Da PI: 4.891

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0006233.1_g000030.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.6	2.1e-18	29	84	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ + yps++ r+eL++klgL++rq ++WF+ rR k+kk Rmu_sc0006233.1_g000030.1 29 PKRQMKTPFQLETLEKAYALETYPSESIRAELSEKLGLSDRQLQMWFCHRRLKDKK 84 69****************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 1536 aa Download sequence
MEGSEGDNQN RNHENSNSKL NNSGEGGKPK RQMKTPFQLE TLEKAYALET YPSESIRAEL 60 SEKLGLSDRQ LQMWFCHRRL KDKKEGGSGS GPGPGPGPGP AKKQRKSVAV LPEPPIDDLA 120 HGSEPASDYG SGSGSGSSPF GHADRNVVSR SVVVEDMPRR RHYESQQSIT ELRAIAIVEA 180 QLGEPLREDG PVLGIEFDQL PPDAFGAPLV AEQQKRHDAK LNKGTPRSLH EYPYLQDHPI 240 IRPDVYGQVA QSHFHDSAID GPTARASPFA SGNEQLSRVH GGHSRARLLS QQEKQAVAFS 300 SPGDDGLPQR DPFINVRMNT QYGEPTIIAP ENSNVLSDGQ INDTMLRMER KRKSEEVRMA 360 KEVEAHEVRI RKELEKQDIL RRKNEERMRK EMERQDRERR KEEERLMRER QREEERSKKE 420 QKREIERREK FLQKEHIRAE KRRQKEELRK EREEVRRKAA LEKATARRLL NKSMELYEDE 480 QLELMELAAA SKGLSSIISI DPDTNLDEFR DDLTAFPPKS VLLKKPFAVH PWIDSEENIG 540 NFLMVWRFLI TFADVLELWP FTVDEFVQAF HDYDSRLLGE IHVALLRLII KDIEDVARTP 600 STGLGLNQNG AANPGGGHPQ IVEGAYAWGF DIRNWQKHLN LLTWPEIFRQ LALSAGFGPQ 660 LKKRSISWSY LPDNDEGKGC RDVISTLRNG SAAENAFAIM QEKGLLAPRR SRHRLTPGTV 720 KFAAFHVLSL EGNKGLTVLE LADKIQKSGL RDLTTSKTPE ASISVALTRD TKLFERIAPS 780 TYRVRSAYRK DPIDAEAILS AARKKVQIFE NGILAAEDVD EVERDDAEEV ERDEDSDCDD 840 VDEDPEVDDL ATPAIVKKSP DQFNEVTPFS ENGQENLCID VAPTVQNEFD KDVSSFPVTA 900 SKEADGPSAS SKQCVSGVEI STSNLDQENM EIDESKAGES WVQGLTEGDY SDLSVEERLS 960 SLVSLIGIAN EGNSIRVVLE DRLEAANALK KQMWAEAQLD KSRLKEENVS KFDIPSFMGG 1020 KAEAHVPGVE DGQSPLLDVY NRINEEGAAE TQNSNHCSQV LLNGVPVERA MVPQDTSMGP 1080 ENILNQQLAY ASKKSRSQLK SYIAHRAEEM YAYRSLPLGQ DRRHNRYWQF VASASSNDPG 1140 SGRIFIELNN GNWRLIDTEE VLKMSTFLSS ALQIMLEMNN KDCRKTWGAK LNASSSVEDL 1200 LQMLTVFETA MKRDFVSSNF AATDELLGSS KQSVIANRDY LDTKSVSVLP WIPHTTAAVA 1260 LRVYEMDSAI TYIPNEKPEP NGDKEVGEHI KIPLRFTPMR NDREIEPTET DHNEQSTHLK 1320 SARNSLKRGR GGREQGRGKK SKSGGSRRKA RGNENENMSQ GLGPVGRRTQ GQGSGRGRRT 1380 VRKRRMKNRA VEGTLIGHVT DLRSSPDSGG ESPRNLAGEW DDENINMIHM KGDEQREEYE 1440 QAEALESDDE EQAVGYEQGN WEIGFDGTSS GWNSGLREPS DEEMDASEDD NNGIEEAREE 1500 DSEGDVDMSD ASDEVPNRII NDDGTDSASD DDDYSD

Sequence ? help Back to Top

Protein Sequence Length: 1536 aa Download sequence

MEGSEGDNQN RNHENSNSKL NNSGEGGKPK RQMKTPFQLE TLEKAYALET YPSESIRAEL  60
SEKLGLSDRQ LQMWFCHRRL KDKKEGGSGS GPGPGPGPGP AKKQRKSVAV LPEPPIDDLA  120
HGSEPASDYG SGSGSGSSPF GHADRNVVSR SVVVEDMPRR RHYESQQSIT ELRAIAIVEA  180
QLGEPLREDG PVLGIEFDQL PPDAFGAPLV AEQQKRHDAK LNKGTPRSLH EYPYLQDHPI  240
IRPDVYGQVA QSHFHDSAID GPTARASPFA SGNEQLSRVH GGHSRARLLS QQEKQAVAFS  300
SPGDDGLPQR DPFINVRMNT QYGEPTIIAP ENSNVLSDGQ INDTMLRMER KRKSEEVRMA  360
KEVEAHEVRI RKELEKQDIL RRKNEERMRK EMERQDRERR KEEERLMRER QREEERSKKE  420
QKREIERREK FLQKEHIRAE KRRQKEELRK EREEVRRKAA LEKATARRLL NKSMELYEDE  480
QLELMELAAA SKGLSSIISI DPDTNLDEFR DDLTAFPPKS VLLKKPFAVH PWIDSEENIG  540
NFLMVWRFLI TFADVLELWP FTVDEFVQAF HDYDSRLLGE IHVALLRLII KDIEDVARTP  600
STGLGLNQNG AANPGGGHPQ IVEGAYAWGF DIRNWQKHLN LLTWPEIFRQ LALSAGFGPQ  660
LKKRSISWSY LPDNDEGKGC RDVISTLRNG SAAENAFAIM QEKGLLAPRR SRHRLTPGTV  720
KFAAFHVLSL EGNKGLTVLE LADKIQKSGL RDLTTSKTPE ASISVALTRD TKLFERIAPS  780
TYRVRSAYRK DPIDAEAILS AARKKVQIFE NGILAAEDVD EVERDDAEEV ERDEDSDCDD  840
VDEDPEVDDL ATPAIVKKSP DQFNEVTPFS ENGQENLCID VAPTVQNEFD KDVSSFPVTA  900
SKEADGPSAS SKQCVSGVEI STSNLDQENM EIDESKAGES WVQGLTEGDY SDLSVEERLS  960
SLVSLIGIAN EGNSIRVVLE DRLEAANALK KQMWAEAQLD KSRLKEENVS KFDIPSFMGG  1020
KAEAHVPGVE DGQSPLLDVY NRINEEGAAE TQNSNHCSQV LLNGVPVERA MVPQDTSMGP  1080
ENILNQQLAY ASKKSRSQLK SYIAHRAEEM YAYRSLPLGQ DRRHNRYWQF VASASSNDPG  1140
SGRIFIELNN GNWRLIDTEE VLKMSTFLSS ALQIMLEMNN KDCRKTWGAK LNASSSVEDL  1200
LQMLTVFETA MKRDFVSSNF AATDELLGSS KQSVIANRDY LDTKSVSVLP WIPHTTAAVA  1260
LRVYEMDSAI TYIPNEKPEP NGDKEVGEHI KIPLRFTPMR NDREIEPTET DHNEQSTHLK  1320
SARNSLKRGR GGREQGRGKK SKSGGSRRKA RGNENENMSQ GLGPVGRRTQ GQGSGRGRRT  1380
VRKRRMKNRA VEGTLIGHVT DLRSSPDSGG ESPRNLAGEW DDENINMIHM KGDEQREEYE  1440
QAEALESDDE EQAVGYEQGN WEIGFDGTSS GWNSGLREPS DEEMDASEDD NNGIEEAREE  1500
DSEGDVDMSD ASDEVPNRII NDDGTDSASD DDDYSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	78	85	RRLKDKKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.2	0.0	HB-other family protein