PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0006246.1_g000013.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB_related
Protein Properties Length: 294aa    MW: 33219.9 Da    PI: 10.4851
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0006246.1_g000013.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.46.1e-17191235147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                r rWT+eE+ ++++a k++G   W++I  ++g  +t+ q++s+ qk+
  Rmu_sc0006246.1_g000013.1 191 RERWTEEEHNKFLEALKLHGRA-WRKIQDHVG-SKTAVQIRSHAQKF 235
                                78******************88.*********.************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    
MVVQVEEVTM AGWKGKIELV GFGLLPRCTH RRNGLEVQVR GLQGNVVSMA AWIRLPRSTT  60
TPGALHIRLS DLPKHPLENL WTAISDSIYN HTGPTLHKWA GNIQTCTRGG ADRLWRLVEQ  120
RQSRGGRGQL CLVGGLMASP AMAPVQDDDD DQYGEISFSP AAVGVQLKDQ LSSGNDYAPK  180
VRKPYTITKQ RERWTEEEHN KFLEALKLHG RAWRKIQDHV GSKTAVQIRS HAQKFFSKVA  240
RDPDGINTSS ADPIDIPPPR PKRKPMRPYP RKHVHPLHTE TSNLEQPIRY NRFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.11e-43MYB_related family protein