PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0006266.1_g000015.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

HSF

Protein Properties

Length: 347aa MW: 38023.4 Da PI: 4.7423

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0006266.1_g000015.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	116	2.3e-36	26	117	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks 85 Fl+k+ye+++d+e ++liswse g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv ++ weF+++ Rmu_sc0006266.1_g000015.1 26 FLTKTYELVDDPEADDLISWSEGGSTFIVWRPAEFARDILPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDC 100 9***************************************************************99.........*** PP XXXXXXXXXXXXXXXXX CS HSF_DNA-bind 86 Fkkgkkellekikrkks 102 Fk+g+k ll++i+r+k Rmu_sc0006266.1_g000015.1 101 FKRGEKGLLREIQRRKI 117 ************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence
MAALPDQNGD SASGGRESQR TIPTPFLTKT YELVDDPEAD DLISWSEGGS TFIVWRPAEF 60 ARDILPKYFK HNNFSSFVRQ LNTYGFRKVV PDRWEFANDC FKRGEKGLLR EIQRRKISPA 120 VSASAAAVVA AATVTAPTLP PATASVSPAN SGDEQVISSN SSPMAVPAPT PTVALLPRTR 180 SCNTTAEILE ENERLRKENM QLSQELAQLR GLCNNILAMM TNYASGQLAR GGGAAAEDKR 240 PYPPPLAVKK SQEGQNAAVS GGEKAEYSAG EEEMEEDQEE ETPPLLPIQT PKLFGVSIGV 300 KRVRRDEGEE EEDHERQHQG CDEVVKPEPS DGSSKHDKEA TWLELRK

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence

MAALPDQNGD SASGGRESQR TIPTPFLTKT YELVDDPEAD DLISWSEGGS TFIVWRPAEF  60
ARDILPKYFK HNNFSSFVRQ LNTYGFRKVV PDRWEFANDC FKRGEKGLLR EIQRRKISPA  120
VSASAAAVVA AATVTAPTLP PATASVSPAN SGDEQVISSN SSPMAVPAPT PTVALLPRTR  180
SCNTTAEILE ENERLRKENM QLSQELAQLR GLCNNILAMM TNYASGQLAR GGGAAAEDKR  240
PYPPPLAVKK SQEGQNAAVS GGEKAEYSAG EEEMEEDQEE ETPPLLPIQT PKLFGVSIGV  300
KRVRRDEGEE EEDHERQHQG CDEVVKPEPS DGSSKHDKEA TWLELRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11660.1	8e-76	HSF family protein