PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0006413.1_g000005.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 177aa    MW: 20769.3 Da    PI: 8.7199
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0006413.1_g000005.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM691.3e-2171385128
                        NAM   5 frFhPtdeelvveyLkkkvegkk.leleevikev.diykv.ePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksg 81 
                                +rFhPtdeelv ++L+++++  + ++  + ++e  + y   ePw    k   +   + + ++fF+kr+k +++gkr  r++  g
  Rmu_sc0006413.1_g000005.1   7 YRFHPTDEELVGYFLQQRARMGNqFHS-NEVSEYsEFYGQeEPWVVWdKnggSSVDDGEPLFFFTKRKKLNPNGKRFDRKVGLG 89 
                                7*****************987773555.44666647775549****633343222245577*********************** PP

                        NAM  82 yWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                +W+ + + + v++    + + + +++ + +  g +p+ ++ +W+mhey+l
  Rmu_sc0006413.1_g000005.1  90 TWSVQFSREVVVQDrdtGCRITRMRREFSYEGGCDPE-QNNSWLMHEYEL 138
                                ***998877666654444445999******9888888.899*******97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    
MGCPFRYRFH PTDEELVGYF LQQRARMGNQ FHSNEVSEYS EFYGQEEPWV VWDKNGGSSV  60
DDGEPLFFFT KRKKLNPNGK RFDRKVGLGT WSVQFSREVV VQDRDTGCRI TRMRREFSYE  120
GGCDPEQNNS WLMHEYELCT TDVLVLCTLK KNPRKASSAQ TNGKKRKRIV DNHTNHV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.14e-13NAC family protein