PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0006413.1_g000020.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 312aa    MW: 35989.5 Da    PI: 4.4982
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0006413.1_g000020.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM72.88.6e-2371403128
                        NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleevikev.diykv.ePwdLp.k....kvkaeekewyfFskrdkkyatgkrknrat 78 
                                 G+rFhPtdeelv ++L+++++  + ++  + ++e  + y   ePw    k    +v  + + ++fF+kr+k +++gkr  r++
  Rmu_sc0006413.1_g000020.1   7 IGYRFHPTDEELVGYFLQQRARMGNqFHS-NEVSEYsKFYGQeEPWVVWdKnggsRV-DDGEPLFFFTKRKKLNPNGKRFDRKV 88 
                                69******************987773555.45666647775449****633343222.244577******************** PP

                        NAM  79 ksgyWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 sg+W+ + + + v +    + + +g+++ + +  g +p+ ++ +W+mhey+l
  Rmu_sc0006413.1_g000020.1  89 GSGTWSGQFSREIVAVDrdtGCRITGMRREFRYEGGCDPE-QNNSWLMHEYEL 140
                                ******998866555544544455*********9999998.899*******97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    
MGCPIGIGYR FHPTDEELVG YFLQQRARMG NQFHSNEVSE YSKFYGQEEP WVVWDKNGGS  60
RVDDGEPLFF FTKRKKLNPN GKRFDRKVGS GTWSGQFSRE IVAVDRDTGC RITGMRREFR  120
YEGGCDPEQN NSWLMHEYEL CASDTLVLCT LKKNPRKASS AQKRKRIVDN QPRKTKAVRS  180
EKAETCEDVD LTDLEQTNSE SRDHQLLQVV DEDYLYPELY PDNGPLFSLE ELLAPSPLNV  240
PDPLPHLESN ESQSQSQDQS YVSTNDQFQD HSYEDNSFMS FLSAEFQQQL GEDNNYSFVC  300
SDQSLDCNDL TW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36160.15e-15NAC family protein