PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0006417.1_g000010.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 344aa MW: 39295.9 Da PI: 6.0684

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0006417.1_g000010.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	129.6	2.4e-40	10	157	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...............kvkaeekewyfFskrdkkya 69 lp+GfrF+P+deel+++yL+kk ++k+ e+e++i+e++++++eP+dLp+ ++++ + ewyfFs+r k++ Rmu_sc0006417.1_g000010.1 10 LPKGFRFRPSDEELLSHYLEKKNQRKDPEVEDIIPEINVCEHEPRDLPAlvftravfldrewftMADSPDMEWYFFSPRVFKHS 93 799*******************************************66899999999998855555677***987766 PP NAM 70 ..tgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykg.rapkgektdWvmheyrl 128 +++r+nr+t++gyWk++gkd++++++ +++++g k++L+fy+ +k +ktdWv+hey l Rmu_sc0006417.1_g000010.1 94 ksKSTRSNRTTEEGYWKKQGKDRRIMTRarSDKQIGGKRILTFYQTdGVQKKQKTDWVIHEYYL 157 33688******************9888889******763456679*******87 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MMMSSGRITL PKGFRFRPSD EELLSHYLEK KNQRKDPEVE DIIPEINVCE HEPRDLPALV 60 FTRAVFLDRE WFTMADSPDM EWYFFSPRVF KHSKSKSTRS NRTTEEGYWK KQGKDRRIMT 120 RARSDKQIGG KRILTFYQTD GVQKKQKTDW VIHEYYLTKA DSNEQIGDFV LCRLKKKSDK 180 SDHDEQEGPC YSMAFIDVEN QSSKELGNVL SISVEGQPDS CNSSDSNMVE ELLDEPGNQP 240 PPPQLQSPIK LGNVSHTTNV HIDECRKRKY QFADNDSSES SPTKNNHIST NDVDELVSNT 300 SSYSESHAAD AIPKYSSFVA ASCIIICSIK RIDLNAIYAP PNSS

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MMMSSGRITL PKGFRFRPSD EELLSHYLEK KNQRKDPEVE DIIPEINVCE HEPRDLPALV  60
FTRAVFLDRE WFTMADSPDM EWYFFSPRVF KHSKSKSTRS NRTTEEGYWK KQGKDRRIMT  120
RARSDKQIGG KRILTFYQTD GVQKKQKTDW VIHEYYLTKA DSNEQIGDFV LCRLKKKSDK  180
SDHDEQEGPC YSMAFIDVEN QSSKELGNVL SISVEGQPDS CNSSDSNMVE ELLDEPGNQP  240
PPPQLQSPIK LGNVSHTTNV HIDECRKRKY QFADNDSSES SPTKNNHIST NDVDELVSNT  300
SSYSESHAAD AIPKYSSFVA ASCIIICSIK RIDLNAIYAP PNSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-28	NAC family protein