PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0006458.1_g000003.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HSF
Protein Properties Length: 101aa    MW: 11236.6 Da    PI: 4.1187
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0006458.1_g000003.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind48.52.4e-1549100354
                                HHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHH CS
               HSF_DNA-bind   3 lkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFv 54 
                                l+k++++++d +l+ +isw ++g+sfvv+d+ efa+ vLp+ Fkh+n++ Fv
  Rmu_sc0006458.1_g000003.1  49 LSKTFDLVNDTSLDLIISWGSTGRSFVVWDPVEFARLVLPRNFKHKNLSTFV 100
                                689************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    
MSKIKGSEIG EGLTREDESC GGDDEDGDER GEEEEPLQCL QGIPMPLCLS KTFDLVNDTS  60
LDLIISWGST GRSFVVWDPV EFARLVLPRN FKHKNLSTFV C
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.13e-28HSF family protein