PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0006483.1_g000023.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ARF
Protein Properties Length: 816aa    MW: 89484.7 Da    PI: 8.3406
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0006483.1_g000023.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3741.8e-23234335199
                                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                                f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +g
  Rmu_sc0006483.1_g000023.1 234 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAG 315
                                89****************************996555555..89***************************************** PP

                                -EEEEEE-SSSEE..EEEEE-S CS
                         B3  78 DfvvFkldgrsefelvvkvfrk 99 
                                D++vF   + +++ l+v+++r+
  Rmu_sc0006483.1_g000023.1 316 DSIVFL--RAENGDLCVGIRRA 335
                                ******..4488999****996 PP
2Auxin_resp115.54.8e-38403486183
                 Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                                aa+ as++++FevvY+Prast+eF+vk++ v++al++++++GmRfkmafetedss++++ +Gt+++v+ ++p+rWp+S+Wr+L+
  Rmu_sc0006483.1_g000023.1 403 AATLASNGQPFEVVYYPRASTPEFCVKASLVKAALQIRWCPGMRFKMAFETEDSSRISWfMGTISSVHVSEPMRWPESPWRLLQ 486
                                6899******************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 816 aa     Download sequence    
MADSRLLGGN RSLLGCNRSL LGSNRCLLGA KKIISGEIFS KIRWAAVGDR IPAKVPATGE  60
SWPDSDGRRP GSSALYLSFK VVRVKWNFLL VGSCVLSKHL LRAKKKKGVG DLEMITFMDS  120
KEKLKEGEKC LDPQLWHACA GGMVQMPSVN AKVFYFPQGH AEHACGPVDF RNCPRIPPYI  180
LCRVSAIKFM ADPETDEVYA KIRLVPLSSS EAGYEDNGIG GINGADSQDK PASFAKTLTQ  240
SDANNGGGFS VPRYCAETIF PRLDYSADPP VQTILAKDVH GETWKFRHIY RGTPRRHLLT  300
TGWSTFVNHK KLVAGDSIVF LRAENGDLCV GIRRAKRGIG GGPESSSGWN PAGGNCAMPY  360
GGFSSYLRED EGKLMRNGNG NGSNSNGSLM GKGKVGPESV LEAATLASNG QPFEVVYYPR  420
ASTPEFCVKA SLVKAALQIR WCPGMRFKMA FETEDSSRIS WFMGTISSVH VSEPMRWPES  480
PWRLLQVSWD EPDLLQNVKR VSPWLVELVS NMPAIHLTPF SPPRKKMRLP QHPDFPFEGQ  540
LPMPTFSGNH HLLGTSSPFG CLPDKTPAGM QGARHAHYGL SLSDIHLNKL QSGLFPAGFP  600
PLDHVATPTK FSNNTMIQRP TMSENVSCLL TMAHSPQSSK KPDDVKPPQL MLFGQTILTE  660
QQISMSSSGD TVSPVLTGNS SSDGSGDKMA NHSDNSGSAL HQQSVQERSS GEGFHWYKDT  720
RHEAEPNLET GHCKVFMESE DVGRTLDFSQ FKSYDELYTK LADMFGIENS ETLNHVLYRD  780
ATGAVKHIGD EPFSDFVKTA RRLTILMDSG SNNVGM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0ARF family protein