PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0006527.1_g000008.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family Trihelix
Protein Properties Length: 585aa    MW: 66459.9 Da    PI: 7.4379
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0006527.1_g000008.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix90.41.9e-2873157187
                   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                                rW++qe+laL+++r++m+ ++r+++lk+plWe++s+k+ e g+ rs+k+Ckek+en+ k+++++keg++++  ++ +t+++fd+
  Rmu_sc0006527.1_g000008.1  73 RWPRQETLALLKIRSQMDAAFRDSSLKAPLWEDISRKLGELGYYRSAKKCKEKFENVYKYHRRTKEGRSGK--PEGKTYRFFDE 154
                                8********************************************************************95..55568****** PP

                   trihelix  85 lea 87 
                                lea
  Rmu_sc0006527.1_g000008.1 155 LEA 157
                                985 PP
2trihelix101.95.1e-32420505187
                   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                                rW+k ev+aLi++r++++ ++ ++  k+ lWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++k r +e+s+tcpyf+q
  Rmu_sc0006527.1_g000008.1 420 RWPKTEVQALINLRTSLDVKYHEAGPKGSLWEEISAGMRRLGYNRSSKRCKEKWENINKYFKKVKESSKTR-PEDSKTCPYFHQ 502
                                8********************************************************************97.99********** PP

                   trihelix  85 lea 87 
                                lea
  Rmu_sc0006527.1_g000008.1 503 LEA 505
                                *85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    
MLGSSGEAMM VTEPAVLLHE GSSTTTETAA ALLSNSGEED HHKHTSGDVD HEGGHDDDHR  60
SYGGGGGGGG GNRWPRQETL ALLKIRSQMD AAFRDSSLKA PLWEDISRKL GELGYYRSAK  120
KCKEKFENVY KYHRRTKEGR SGKPEGKTYR FFDELEAFDR HQNSHHPSII PPKPPVVPWT  180
NNNHHHPNQI VPPVVTVPQN GVTPATDPII HSSTNNFSRP QQIQASQDNT NGFRLLNPTN  240
LFSSSTSSTT ASDEEFQQRN KRKRKWKYFF RRLTKQVLEK QEKLQETFLE AITKCDQERM  300
VKEEALRMQE MARIDREHEI LVQERSTAAA KDTALIQFLQ KVSLQHNSND NRSLEITDAA  360
ILVIPPTNVP RPLPALPVSW ATDQRGLTTS SDLAPRTLEA KKVYSNGENN SVLAAVGSSR  420
WPKTEVQALI NLRTSLDVKY HEAGPKGSLW EEISAGMRRL GYNRSSKRCK EKWENINKYF  480
KKVKESSKTR PEDSKTCPYF HQLEALYKKK NKKIEYHKSC IDDRSAEKLQ IMQPLRENVD  540
PNQEEDEHDH GEDGESTEED QEHDNDHGQV YRDSSKLQTV FNGDG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.21e-120Trihelix family protein