PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0006586.1_g000011.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GATA
Protein Properties Length: 230aa    MW: 25204.3 Da    PI: 8.4965
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0006586.1_g000011.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.61.5e-17152185134
                       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                C +Cgt +Tp+WR gp g+ktLCnaCG++y++ +
  Rmu_sc0006586.1_g000011.1 152 CLHCGTDQTPQWRAGPFGPKTLCNACGVRYKSGR 185
                                99*****************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MVPLDPASCL VDDLRNFLSD VGDHDGRPDD PSRPLIATEE AEEELEWISN KDAFPAVETF  60
ILSEQVGGIA NAKHQSPVSV LENSTNSSSA SLMSSCGGLK PPHRARTKGR RRRSEIPAQQ  120
LFWNQPIESK PSRSHSASAS ASASKLDIGR KCLHCGTDQT PQWRAGPFGP KTLCNACGVR  180
YKSGRLCPEY RPASSPTFSS EMHSNSHRKV LEMRKQKYGM GMVVKPEDKG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.19e-39GATA family protein