PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0006626.1_g000003.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 221aa    MW: 24919.3 Da    PI: 9.7365
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0006626.1_g000003.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.81.1e-111147945
                               HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                     SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                               r+  +  R+  ++KK eELS+LC+++v+vi+f +t+k
  Rmu_sc0006626.1_g000003.1 11 RKKMYRDRKMNLFKKGEELSILCGTDVLVILFQPTDK 47
                               5666889*************************99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    
MELLPDQRRA RKKMYRDRKM NLFKKGEELS ILCGTDVLVI LFQPTDKGTT SQPAAETWPK  60
DPTEVERIIR RYKAKLAAST HASSPRTSVL AIKDKSTSTP PSSSPSPSPS PSRSVPEKRK  120
YMNLDLSLSG SYDSQTKKLK EDKGKKKLHA WDDDENINSQ EAGMEMQLKY PTIWDHAARE  180
NLYDDGELMI GYDDHQAKLA SLEAKQKAIT KRIASLEATH A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.12e-12M-type_MADS family protein