PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0006662.1_g000002.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Protein Properties

Length: 758aa MW: 84892.2 Da PI: 6.6418

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0006662.1_g000002.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	55.8	8.3e-18	597	685	2	87
EEE-..-HHHHTT-EE--H.HH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 2 fkvltpsdvlksgrlvlpk.kfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDf 79 +kvl++sdv+++gr+vlpk k ae+h +++ + ++ + +ed ++r+W+++++y ++ks++y+l+ ++ +Fv+angL+egDf Rmu_sc0006662.1_g000002.1 597 QKVLKQSDVGNLGRIVLPKvKEAETHlpELEARDGISIAMEDiGTSRVWNMRYRYwpNNKSRMYLLE-NTGDFVRANGLQEGDF 679 79**************95669999999999******7778*****777777777777.************ PP EEEEE-SS CS B3 80 vvFkldgr 87 +v++ + Rmu_sc0006662.1_g000002.1 680 IVIYS--D 685 993..3 PP

Sequence ? help Back to Top
Protein Sequence Length: 758 aa Download sequence
MDGVQVQVHG NHHQDLHGED HHSQHLVGKE VMRNDFGEEG DAADLWLDNE QDSLLADVND 60 GTASIFCNDF PPLPDFPCMS SSSSSSSTRV PVKTVSSSSS ASSSSSAASW AVLKSDAEDN 120 NNYHSQDYQQ QQDNNNNYYS RNDSVDAHPA GALSSTASME ISQPSDLGME CMDMMETFGY 180 IDLFEGNELF DPSSIFQNEN PMMDQFQAQE QPPQEQLHAD NQTSHPQENM TMGDQSNKVP 240 EDDMASVFLE WLRSNRETVS AEDLRSVKIK KSTIESAARR LGGGKEAMKQ LLKLVLEWVQ 300 TNHLQKRRGT KDSGIQQYAV DPFQNAIPNP NPSLNPTQNP PITSLWMASP QYDAAAPILV 360 PTPSHVGYPS TPMMGFMGQD PFGNGPGYQQ PISDQYQHQM LETAPTWPPS SPFMGNNYGS 420 FPDSNIQLAP PQHQQPLSGY GGQYGQYQYF QGQSGEPQLV RLGSSATKEA RKKRMQRQRR 480 TLSHHHGRHH GHQQNQHPNQ MPDQRLVGNA DHNCTTAAMG NPAASNWFYW PTTAAGGPAP 540 AASPAMMQTM APEAAPLVLP VDRPASQGQN YNPGRINTQE RRQGWRPENK NLRFLLQKVL 600 KQSDVGNLGR IVLPKVKEAE THLPELEARD GISIAMEDIG TSRVWNMRYR YWPNNKSRMY 660 LLENTGDFVR ANGLQEGDFI VIYSDVKCNK YRPKGQESRK GTNMQALHLA TMVRHLRNSK 720 GRKKKKKEKE AEFFRETQLA QPPFRQRWSR VVGMQSSP

Sequence ? help Back to Top

Protein Sequence Length: 758 aa Download sequence

MDGVQVQVHG NHHQDLHGED HHSQHLVGKE VMRNDFGEEG DAADLWLDNE QDSLLADVND  60
GTASIFCNDF PPLPDFPCMS SSSSSSSTRV PVKTVSSSSS ASSSSSAASW AVLKSDAEDN  120
NNYHSQDYQQ QQDNNNNYYS RNDSVDAHPA GALSSTASME ISQPSDLGME CMDMMETFGY  180
IDLFEGNELF DPSSIFQNEN PMMDQFQAQE QPPQEQLHAD NQTSHPQENM TMGDQSNKVP  240
EDDMASVFLE WLRSNRETVS AEDLRSVKIK KSTIESAARR LGGGKEAMKQ LLKLVLEWVQ  300
TNHLQKRRGT KDSGIQQYAV DPFQNAIPNP NPSLNPTQNP PITSLWMASP QYDAAAPILV  360
PTPSHVGYPS TPMMGFMGQD PFGNGPGYQQ PISDQYQHQM LETAPTWPPS SPFMGNNYGS  420
FPDSNIQLAP PQHQQPLSGY GGQYGQYQYF QGQSGEPQLV RLGSSATKEA RKKRMQRQRR  480
TLSHHHGRHH GHQQNQHPNQ MPDQRLVGNA DHNCTTAAMG NPAASNWFYW PTTAAGGPAP  540
AASPAMMQTM APEAAPLVLP VDRPASQGQN YNPGRINTQE RRQGWRPENK NLRFLLQKVL  600
KQSDVGNLGR IVLPKVKEAE THLPELEARD GISIAMEDIG TSRVWNMRYR YWPNNKSRMY  660
LLENTGDFVR ANGLQEGDFI VIYSDVKCNK YRPKGQESRK GTNMQALHLA TMVRHLRNSK  720
GRKKKKKEKE AEFFRETQLA QPPFRQRWSR VVGMQSSP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	722	728	RKKKKKE
2	722	729	RKKKKKEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24650.1	1e-69	B3 family protein