PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0006669.1_g000014.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 379aa MW: 43551.4 Da PI: 4.5831

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0006669.1_g000014.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	42.5	2.1e-13	13	144	6	128
NAM 6 rFhPtdeelvveyLkkkvegkk.leleevikevdiykv...ePwdLpkkvkaeek.....ewyfFskrdkkyatgkrknratk. 79 FhPtd++ v +yL ++++ + + +++++e++iy + Pwd+ + +++ +k +yfFs+ +k g+r r++ Rmu_sc0006669.1_g000014.1 13 TFHPTDSDFVGFYLYNRIKYPTsIGGKQTVPEIEIYGTtglPPWDIWR-IYEASKfphqyYIYFFSPVKKL---GSRCFRIIGc 92 5****************9886666677999988876444874.3332222321255888887664...7788886444 PP NAM 80 .sgyWkatgkdkevlsk.kgelvglkktLvfykgrapk.gektdWvmheyrl 128 g+W++t + k+v+++ +e g + + + ++r++ +++ W+m+e+++ Rmu_sc0006669.1_g000014.1 93 dGGTWSETESAKPVHVNgIEEPYGKLRKFRYENNRDRGcEHHAAWLMDEFTI 144 49*********97445568888999998665544146899****86 PP

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence
MSLEELDVGV VKTFHPTDSD FVGFYLYNRI KYPTSIGGKQ TVPEIEIYGT TGLPPWDIWR 60 IYEASKFPHQ YYIYFFSPVK KLGSRCFRII GCDGGTWSET ESAKPVHVNG IEEPYGKLRK 120 FRYENNRDRG CEHHAAWLMD EFTINQAPDL ALCRLKLNDK GGARKKRKKS SDETNEDENH 180 RKIMSFKNRK LEPKRVQVQN NMCEQQKGSA SFSTTSTTQQ LPPQCDDHDY CVDENPVFSP 240 TGLVDDCHDY CVDENLLFSP TGLIDDYHDI LNSDQFMASL DQWYEEQLQQ SSDSSLLVPQ 300 QQVEPNISCK EQQQQQDEQK LPPSPSLVHQ QQLCGGLDLM VYGYQDPDVA LDTPYLQSDE 360 FNGFDQDQPK ALCQYSDVL

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence

MSLEELDVGV VKTFHPTDSD FVGFYLYNRI KYPTSIGGKQ TVPEIEIYGT TGLPPWDIWR  60
IYEASKFPHQ YYIYFFSPVK KLGSRCFRII GCDGGTWSET ESAKPVHVNG IEEPYGKLRK  120
FRYENNRDRG CEHHAAWLMD EFTINQAPDL ALCRLKLNDK GGARKKRKKS SDETNEDENH  180
RKIMSFKNRK LEPKRVQVQN NMCEQQKGSA SFSTTSTTQQ LPPQCDDHDY CVDENPVFSP  240
TGLVDDCHDY CVDENLLFSP TGLIDDYHDI LNSDQFMASL DQWYEEQLQQ SSDSSLLVPQ  300
QQVEPNISCK EQQQQQDEQK LPPSPSLVHQ QQLCGGLDLM VYGYQDPDVA LDTPYLQSDE  360
FNGFDQDQPK ALCQYSDVL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	165	169	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12910.1	2e-07	NAC family protein