PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0006766.1_g000012.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 425aa MW: 44994 Da PI: 7.9346

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0006766.1_g000012.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.7	6.7e-11	360	405	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri ++ +L++l+P+ +k s a++L +Av++Ik Lq Rmu_sc0006766.1_g000012.1 360 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIKGLQ 405 689*******************7....688***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence
MLSRRLTTDV LNRFQDLSTI TLYFCCDSSY SCTLHPHHPR PKSPWAQAQP ASPATAPLRA 60 PSSPPPSTPS LEQSPSVNSP PSDLLPSSAD TSPGYGSAPG SLLTSAVDSV IGAVAEREFS 120 PLRPASFVGR YFSGGGGGAD GDSSSLTSES TFKVNPSNAD KEATKPLPRS YGLGEMAAAI 180 GSSSSTSCSS SALVRQRSSP AGFLSHLTDN NGGFSVTRGS GSYSSQGGPN GGHGGTRLKS 240 QLSFTRQDSL SQISEVSENA VEGVSSTSGQ HSAMHSYPAS SFGMDSWDNT NSIVFSAPTS 300 KRAKNMDGDI FNCLNTLESQ FSLPQTTLEM ATVEKLLHIP EDSVPCKIRA KRGCATHPRS 360 IAERERRTRI SGKLKKLQDL VPNMDKQTSY ADMLDLAVQH IKGLQNQVQN LHKDLEGCTC 420 GCKPT

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence

MLSRRLTTDV LNRFQDLSTI TLYFCCDSSY SCTLHPHHPR PKSPWAQAQP ASPATAPLRA  60
PSSPPPSTPS LEQSPSVNSP PSDLLPSSAD TSPGYGSAPG SLLTSAVDSV IGAVAEREFS  120
PLRPASFVGR YFSGGGGGAD GDSSSLTSES TFKVNPSNAD KEATKPLPRS YGLGEMAAAI  180
GSSSSTSCSS SALVRQRSSP AGFLSHLTDN NGGFSVTRGS GSYSSQGGPN GGHGGTRLKS  240
QLSFTRQDSL SQISEVSENA VEGVSSTSGQ HSAMHSYPAS SFGMDSWDNT NSIVFSAPTS  300
KRAKNMDGDI FNCLNTLESQ FSLPQTTLEM ATVEKLLHIP EDSVPCKIRA KRGCATHPRS  360
IAERERRTRI SGKLKKLQDL VPNMDKQTSY ADMLDLAVQH IKGLQNQVQN LHKDLEGCTC  420
GCKPT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	1e-90	bHLH family protein