PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0006777.1_g000005.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 352aa MW: 39427.2 Da PI: 6.9775

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0006777.1_g000005.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.4	1.1e-10	14	85	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT.......................TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmg.......................kgRtlkqcksrwqkyl 48 rg+WT++Ede+lv+++++ g+ +W+t +++ g + R++k+c++rw +yl Rmu_sc0006777.1_g000005.1 14 RGPWTPDEDEILVNYINKNKGHgSWRTLPHHAGlnffvctatrsiwvlvnvcpfhgLLRCGKSCRLRWTNYL 85 89***************99999********************************************97 PP
2	Myb_DNA-binding	50.8	3.8e-16	91	136	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE++l+++++ +lG++ W++Ia+ ++ gRt++++k+ w+++l Rmu_sc0006777.1_g000005.1 91 RGPFTDEEEKLIIQLHGMLGNR-WAAIASQLP-GRTDNEIKNLWNTHL 136 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MGRTPCCDKK GLKRGPWTPD EDEILVNYIN KNKGHGSWRT LPHHAGLNFF VCTATRSIWV 60 LVNVCPFHGL LRCGKSCRLR WTNYLRPDIK RGPFTDEEEK LIIQLHGMLG NRWAAIASQL 120 PGRTDNEIKN LWNTHLRKRL IRMGVNPQNH EPFTSDGSTS KASASIATRH MAQWESARLE 180 AEARLSRESS NFSTPLLDKS DSDYFLRLWY SEVGQSFRKF PTAGKTPSDS PISEASSSGK 240 CGSISAVTTE IGHCLMGSST IAGNQDEDIE YKVFKSITGE DMVYRIYKSN TENVTRGSDS 300 SSSNKLDDSS ESAMDLLLDY PINNDMSFLE DDMNDYATST SAKLENAFIC PL

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MGRTPCCDKK GLKRGPWTPD EDEILVNYIN KNKGHGSWRT LPHHAGLNFF VCTATRSIWV  60
LVNVCPFHGL LRCGKSCRLR WTNYLRPDIK RGPFTDEEEK LIIQLHGMLG NRWAAIASQL  120
PGRTDNEIKN LWNTHLRKRL IRMGVNPQNH EPFTSDGSTS KASASIATRH MAQWESARLE  180
AEARLSRESS NFSTPLLDKS DSDYFLRLWY SEVGQSFRKF PTAGKTPSDS PISEASSSGK  240
CGSISAVTTE IGHCLMGSST IAGNQDEDIE YKVFKSITGE DMVYRIYKSN TENVTRGSDS  300
SSSNKLDDSS ESAMDLLLDY PINNDMSFLE DDMNDYATST SAKLENAFIC PL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61250.1	1e-106	MYB family protein