PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0006803.1_g000016.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 226aa    MW: 25026.5 Da    PI: 4.503
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0006803.1_g000016.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox47.53e-1547106356
                                --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS
                   Homeobox   3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 
                                +R+++t+ ql++L+ l++    ++p+ e+++e+  +l    ++++++V++WFqN +a+e+
  Rmu_sc0006803.1_g000016.1  47 HRWAPTPAQLRILQGLYYDkgFKNPTPEQIQEICLHLqqygQIEDKNVFFWFQNLKARER 106
                                7****************96568************************************98 PP
2Wus_type_Homeobox963.1e-3145108264
          Wus_type_Homeobox   2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                                +++RW+Ptp Q++iL+ ly+ +G ++P+ e+iq+i  +L++yG+iedkNVf+WFQN kaRer k
  Rmu_sc0006803.1_g000016.1  45 TNHRWAPTPAQLRILQGLYYdKGFKNPTPEQIQEICLHLQQYGQIEDKNVFFWFQNLKARERLK 108
                                679***************9889****************************************87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    
MEPRTLQLME LQTQQQMELQ TQQPTEEGGS TQAAGSSANT PVRPTNHRWA PTPAQLRILQ  60
GLYYDKGFKN PTPEQIQEIC LHLQQYGQIE DKNVFFWFQN LKARERLKLR EFRNVRVGGS  120
LDLNFGSTSS TDDDGSIDLN FGSRVDYGVD PYSSSPFNAN TRGDHQEVET LPLFPVHGEN  180
VLGNPKTTSE EGGAFGYYSG GTGGYNSGFP VSLELSLNSS GVIDLD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.11e-21WOX family protein