PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0006847.1_g000022.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 273aa    MW: 31950.2 Da    PI: 4.8895
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0006847.1_g000022.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM72.21.3e-2281482128
                        NAM   2 ppGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykv.ePwdLpk.....kvka....eekewyfFskrdkkyatgkrk 74 
                                 p  rF P ++el+++yLk+kv+g +++  eevi e+d+y+  +Pw++ +     +       ++k++yfF++++kk+a+++r+
  Rmu_sc0006847.1_g000022.1   8 LPSQRFCPMEDELLMFYLKPKVKGMEVPGnEEVICELDLYSDqDPWNIWErfearR--VndlrRNKDLYFFTQKKKKTARSTRT 89 
                                5778**********************7761456******98659****74345552..0335466799**************** PP

                        NAM  75 nr.atksgyWkatgkdkevlskkgel......vglkktLvfykgrapkgektdWvmheyrl 128
                                +r + + g+Wk +   ke++  ++++       glkkt ++   ++ + ++  W+m e++l
  Rmu_sc0006847.1_g000022.1  90 SRtVGNGGTWKGQNAAKEIYLLDQNQhptstlLGLKKTYTYK--NKGSVHHGCWIMYEFEL 148
                                **6666999***********984444456666*******998..444556899******97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    
MEDGRMLLPS QRFCPMEDEL LMFYLKPKVK GMEVPGNEEV ICELDLYSDQ DPWNIWERFE  60
ARRVNDLRRN KDLYFFTQKK KKTARSTRTS RTVGNGGTWK GQNAAKEIYL LDQNQHPTST  120
LLGLKKTYTY KNKGSVHHGC WIMYEFELDK SQLLHKKQVN KNEYILCLLR KNDVLPEKKR  180
KRQEEEEMLE DYVEDEDGDN IDPESISKEP QEKRQRLLPC TDIVPAPSME AEQEQLLISD  240
QQFLQSAPSL EATQEAVPTT LEVEPLFLQV EGT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03200.17e-12NAC family protein