PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0006936.1_g000006.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family Whirly
Protein Properties Length: 228aa    MW: 25229 Da    PI: 10.1466
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0006936.1_g000006.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly192.66.1e-60541881137
                     Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakg 84 
                                s+yk+kaal++ +v+ptf++l+sg+++++r+G+++l++++a++erkyd ekkq falsatev++l++l++k+sce+fhdp++++
  Rmu_sc0006936.1_g000006.1  54 SIYKGKAALSLSPVLPTFTKLESGSVVVERRGSVMLKFMPAIGERKYDSEKKQLFALSATEVGSLISLGPKDSCELFHDPSMQS 137
                                7*********************************************************************************** PP

                     Whirly  85 sneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                                sn+G+vrk+l+++P++dG  +f++l+v n+l+k+ esfsvPv+ aefav++++
  Rmu_sc0006936.1_g000006.1 138 SNAGQVRKSLSIKPHADG--YFISLTVVNNLLKTRESFSVPVTTAEFAVMKTA 188
                                *****************5..9******************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    
MMQLLRVFSS SRNQLSKRAA LSLDSFTQST SFSTARQNFS AKGRIGDQVY APFSIYKGKA  60
ALSLSPVLPT FTKLESGSVV VERRGSVMLK FMPAIGERKY DSEKKQLFAL SATEVGSLIS  120
LGPKDSCELF HDPSMQSSNA GQVRKSLSIK PHADGYFISL TVVNNLLKTR ESFSVPVTTA  180
EFAVMKTACS FALPHIIGWD RLTNKVPRGI EVHKSEMAEP QLLDEWER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.19e-79Whirly family protein