PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0007007.1_g000003.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 634aa MW: 71034 Da PI: 5.3492

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0007007.1_g000003.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.9	1e-14	435	481	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h Er+RR+++N++f+ L++l+P+ +K +K++iL +A+eY+k+L+ Rmu_sc0007007.1_g000003.1 435 NHVLSERKRREKLNERFSILKSLVPSI-----QKDDKVAILDEAIEYLKDLE 481 78999*******************6.....5**************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 634 aa Download sequence
MGTRLQNQER VPENLRKQLA IAVRSIQWSY AIFWSISPRQ PGVLEWGDGY YNGDIKTRKT 60 VQAIELDADQ MGLQRSEHLR ELYESLSAGE ASPQARRPSA ALSPEDLADT EWYYLVCMSF 120 VFNIGQGLPG RTLANGQPIW LCNAHYADSK VFSRSLLAKT VVCFPFMGGV IELGVTELVL 180 EDPGLIQHVK TSFLEVPYPL CLNTTNPSAG SYRNDNDLTS SALDQDVIDT KFIPIVRCEE 240 IDVTYSSNGF GPNQPAEDSF MVEGMNGAAS QVQSWQYMDD ELSNYVHHSM DSSDCISQTL 300 VYPEKIVSGP NGEKVVSDHF LQDHKECNST KQVSLAPESN DLHYQSVLSS LLKSSHQLIL 360 GPHFQNGRQE SSFVSWKKGG SVKCRKQRVG SPQYLLKKIL FEVPKMHVIC VLESPEDNGD 420 RNGVWRPEAG ESLMNHVLSE RKRREKLNER FSILKSLVPS IQKDDKVAIL DEAIEYLKDL 480 EKRVEELETS QESTDLEATI KRKPQDNSEK TSDSCCNDKR SNGKKPLVYK RKACDIDETE 540 PEINYVASKN SSSDNVKVSM NNKGALIEMR FPWREGVLLE IMDVTSSLHL DTHSVESSTT 600 DGILSLTIQS RFKGSSIASA GTIEQALQRI ARNC

Sequence ? help Back to Top

Protein Sequence Length: 634 aa Download sequence

MGTRLQNQER VPENLRKQLA IAVRSIQWSY AIFWSISPRQ PGVLEWGDGY YNGDIKTRKT  60
VQAIELDADQ MGLQRSEHLR ELYESLSAGE ASPQARRPSA ALSPEDLADT EWYYLVCMSF  120
VFNIGQGLPG RTLANGQPIW LCNAHYADSK VFSRSLLAKT VVCFPFMGGV IELGVTELVL  180
EDPGLIQHVK TSFLEVPYPL CLNTTNPSAG SYRNDNDLTS SALDQDVIDT KFIPIVRCEE  240
IDVTYSSNGF GPNQPAEDSF MVEGMNGAAS QVQSWQYMDD ELSNYVHHSM DSSDCISQTL  300
VYPEKIVSGP NGEKVVSDHF LQDHKECNST KQVSLAPESN DLHYQSVLSS LLKSSHQLIL  360
GPHFQNGRQE SSFVSWKKGG SVKCRKQRVG SPQYLLKKIL FEVPKMHVIC VLESPEDNGD  420
RNGVWRPEAG ESLMNHVLSE RKRREKLNER FSILKSLVPS IQKDDKVAIL DEAIEYLKDL  480
EKRVEELETS QESTDLEATI KRKPQDNSEK TSDSCCNDKR SNGKKPLVYK RKACDIDETE  540
PEINYVASKN SSSDNVKVSM NNKGALIEMR FPWREGVLLE IMDVTSSLHL DTHSVESSTT  600
DGILSLTIQS RFKGSSIASA GTIEQALQRI ARNC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	440	445	ERKRRE
2	441	446	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41315.1	0.0	bHLH family protein