PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0007062.1_g000020.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 291aa    MW: 32658.3 Da    PI: 6.5196
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0007062.1_g000020.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM137.87e-4351422127
                        NAM   2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknra 77 
                                ppGfrF Pt+eelv++yL +k++g++      ++++i+ +diy+++PwdLp+    ++++++++w+fF++r++++a+g r++r 
  Rmu_sc0007062.1_g000020.1   5 PPGFRFYPTEEELVSFYLPHKLDGRRedvnRVMDRIIPVLDIYEFNPWDLPRnsgeMCHGDQEQWFFFIPRQESEARGGRPKRL 88 
                                9*************************66633334479999**********9546755555778********************* PP

                        NAM  78 tksgyWkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyr 127
                                t++gyWkatg+   v+++    ++ ++glk+t+vfy+grap+g+kt+W m+ey+
  Rmu_sc0007062.1_g000020.1  89 TTTGYWKATGSPSYVFTSssntNHGAIGLKRTMVFYTGRAPNGSKTEWKMNEYK 142
                                ****************9866555556***************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    
MEDFPPGFRF YPTEEELVSF YLPHKLDGRR EDVNRVMDRI IPVLDIYEFN PWDLPRNSGE  60
MCHGDQEQWF FFIPRQESEA RGGRPKRLTT TGYWKATGSP SYVFTSSSNT NHGAIGLKRT  120
MVFYTGRAPN GSKTEWKMNE YKAIDGDNQL QAPSSSNAAP APPLRQEFSL CRVYKKSKCL  180
RAFDRRPSGT GDIMRRPTVT VHLPAVPQLA DTDHQEGSTY PTSISHARNI IPAAPNSYNV  240
EVERRSLSSS GSSSSGDLGQ PSLSGQSTGS LPMAVDNGEP LWELDQLDWF N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.19e-71NAC family protein