PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0007276.1_g000004.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 286aa    MW: 32828 Da    PI: 8.1868
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0007276.1_g000004.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.71.3e-5491341128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                                lppGfrFhPtdeel+v+yLk+++ +k++++ ++i+evdiyk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nrat sgyWk
  Rmu_sc0007276.1_g000004.1   9 LPPGFRFHPTDEELIVYYLKNQAISKPCPV-SIIPEVDIYKFDPWQLPEKAEFGENEWYFFSPRDRKYPNGVRPNRATVSGYWK 91 
                                79****************************.89***************99999******************************* PP

                        NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                atg+dk+++s  ++ vg+kk Lvfykgr pkg+ktdW+mheyrl
  Rmu_sc0007276.1_g000004.1  92 ATGTDKAIHS-ASKYVGVKKALVFYKGRPPKGVKTDWIMHEYRL 134
                                **********.9999***************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    
MEANNGSGLP PGFRFHPTDE ELIVYYLKNQ AISKPCPVSI IPEVDIYKFD PWQLPEKAEF  60
GENEWYFFSP RDRKYPNGVR PNRATVSGYW KATGTDKAIH SASKYVGVKK ALVFYKGRPP  120
KGVKTDWIMH EYRLSDSKRQ ASKQLGSMRL DDWVLCRIYK KRHVNKAYLD DPKLEDSSPQ  180
MEHFTAANDV KEEQVLNFPR TFSLTSLLDM DYLGPISQLL NDNPTYDLHN MLANNAGLNG  240
QTFQFGDQIP YQSADSARFQ VMNHSSTFNQ PLFVNPAYNN MNGLNH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-118NAC family protein