PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0007301.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

GATA

Protein Properties

Length: 482aa MW: 52918.6 Da PI: 4.5606

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0007301.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	57.8	1.5e-18	401	434	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs+C++ kTp+WR gp g+ktLCnaCG++y++ + Rmu_sc0007301.1_g000001.1 401 CSHCQVQKTPQWRTGPLGPKTLCNACGVRYKSGR 434 *******************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence
MNGAFDFSSK SGGVGVVLRD AMRDIIGGIC LKVNFVASPD IVEAMACRAA CSLAVQCHLS 60 PIMVEIDYQS IVSTIEAEGE ETSSLGRIIE DINFSLGMLM ESTLDEEIDR KAAPEDRILP 120 FIFLAPFPLL SSSSASSSHQ EMEPCMEARA LKSSLLTELA LKSTQHGLME EFWSVTAISG 180 VPSEDFSVDD LLDFSNGEFE DGSVEEEQEL EEQEEEEEEE DKDSVSMDSV ENSNSSNFTE 240 STLASHLAVP DDDLAELEWV SHFVDDSVSE LSLLYPVSKQ KPEALKENRS EPEARKLAQS 300 RLSWLPSQVP VKARSKRCRP ARWCRSLWNP LGDSPSLTPC LSSPSSSSCS SGFSLSTPCL 360 IFTSPVHNMG LFSGEPAAKK QKRKPAVQTG DEVIVGIQRK CSHCQVQKTP QWRTGPLGPK 420 TLCNACGVRY KSGRLFPEYR PACSPTFSGD VHSNSHRKVL EMRKRKDTGE PEPGMSKMIP 480 GF

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence

MNGAFDFSSK SGGVGVVLRD AMRDIIGGIC LKVNFVASPD IVEAMACRAA CSLAVQCHLS  60
PIMVEIDYQS IVSTIEAEGE ETSSLGRIIE DINFSLGMLM ESTLDEEIDR KAAPEDRILP  120
FIFLAPFPLL SSSSASSSHQ EMEPCMEARA LKSSLLTELA LKSTQHGLME EFWSVTAISG  180
VPSEDFSVDD LLDFSNGEFE DGSVEEEQEL EEQEEEEEEE DKDSVSMDSV ENSNSSNFTE  240
STLASHLAVP DDDLAELEWV SHFVDDSVSE LSLLYPVSKQ KPEALKENRS EPEARKLAQS  300
RLSWLPSQVP VKARSKRCRP ARWCRSLWNP LGDSPSLTPC LSSPSSSSCS SGFSLSTPCL  360
IFTSPVHNMG LFSGEPAAKK QKRKPAVQTG DEVIVGIQRK CSHCQVQKTP QWRTGPLGPK  420
TLCNACGVRY KSGRLFPEYR PACSPTFSGD VHSNSHRKVL EMRKRKDTGE PEPGMSKMIP  480
GF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66320.2	7e-55	GATA family protein