PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0007395.1_g000006.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 300aa    MW: 35027.2 Da    PI: 6.2384
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0007395.1_g000006.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM155.42.4e-48151422128
                        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyat.gkrknratksgy 82 
                                +pGfrFhPt+eelv +yLk+k+ +k+++l ++i+e+d+yk+eP++Lp  + +++++ +w+fF +r+ ky++  +r nrat++gy
  Rmu_sc0007395.1_g000006.1  15 QPGFRFHPTEEELVLYYLKRKICHKRFKL-NIITETDVYKCEPEELPglSLLQTGDLQWFFFNPRNCKYPNkPTRINRATRHGY 97 
                                69***************************.89***************6447777888*************8468********** PP

                        NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                Wk tgkd+++++ +++ vg+kktLvfy+grap+g++tdWvmhey+l
  Rmu_sc0007395.1_g000006.1  98 WKVTGKDRTITN-NSRSVGVKKTLVFYTGRAPSGNRTDWVMHEYTL 142
                                ************.999****************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    
MMVSADDLVI VFRQQPGFRF HPTEEELVLY YLKRKICHKR FKLNIITETD VYKCEPEELP  60
GLSLLQTGDL QWFFFNPRNC KYPNKPTRIN RATRHGYWKV TGKDRTITNN SRSVGVKKTL  120
VFYTGRAPSG NRTDWVMHEY TLHDEELKRC GNVPDAYALC KVYKKSGLGP KNGEQYGAPF  180
KEEDCSDMDE VQETPVNKQI ENQISRAKGG VNPVINSYSY GDSYESPHPS SFDRDMEEFM  240
KKIAGEAEHD MYHEAGMFLH DLRPNFDQHL YMDPELDWGN YIDHDQLKSE ESSQFNNRHE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.14e-85NAC family protein