PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0007406.1_g000009.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB_related
Protein Properties Length: 301aa    MW: 32683.2 Da    PI: 10.3583
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0007406.1_g000009.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.42.5e-11555146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                               +++WT+eE+  l+ +v ++G g W+tI +          R+  ++k++w++
  Rmu_sc0007406.1_g000009.1  5 KQKWTPEEEAALKAGVLKHGAGKWRTILSDKEfgailHLRSNVDLKDKWRN 55
                               79**************************999998***88***********9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    
MGAPKQKWTP EEEAALKAGV LKHGAGKWRT ILSDKEFGAI LHLRSNVDLK DKWRNINVTA  60
IWGSRQKAKL ALKRTTPTAK NDNSPLAVTT AVQSNEETAD AKPLASSGAK VQTTESKPPI  120
ARLDHLIFEA ITNLKEPRGS DRNTITTYIE DQYWAPSNLS KLLSTKLKHM TANGKLVKVK  180
HRYRIPPNSA TSEKRRNSST LLTEGKQRDS TRADKSVVSI LTKSQVDAEL TMIRSMTAQE  240
AAAAAAQAVA EAEAAIAAAE EAAREAEAAE AEAEAAQVFA KAAVKALKCR RLDLDMKLAH  300
G
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67580.11e-78MYB_related family protein