PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0007474.1_g000020.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Trihelix

Protein Properties

Length: 322aa MW: 37368.4 Da PI: 4.4958

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0007474.1_g000020.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	59.9	6.3e-19	29	116	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstc 79 Wt+qe+ +Li+ +++++ +lrrg+lk+ +Weev+ + + +++++qC++k+e+l++r++ +k++ + s + Rmu_sc0007474.1_g000020.1 29 WTHQETVHLIQSYQDKWYELRRGQLKASQWEEVAVTVaarcgyDYTEPSKTATQCRHKMEKLRQRHRSVKKRLGLS---FGSGW 109 *********************************998666665566689*********************94...5557 PP trihelix 80 pyfdqle 86 pyfd +e Rmu_sc0007474.1_g000020.1 110 PYFDLME 116 ****998 PP

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence
MATPPSPTAS PSASPVSTTA TKKPHPIPWT HQETVHLIQS YQDKWYELRR GQLKASQWEE 60 VAVTVAARCG YDYTEPSKTA TQCRHKMEKL RQRHRSVKKR LGLSFGSGWP YFDLMERLEQ 120 GPMPISARRP YQEEEEDDEE AEEEEPYFDL MERLEQGPMP ISARRPYQEE EEEDEEAEEE 180 EEAEDHGGEE EEVDEEEEDN YRKLQSLDYI LRRPAIVNRF SSGAKEGHFR DSAAAKRPRE 240 AAADDDGYYG DVVDGQRGTE MVVELATEIR GFAKRLIGVE NMRMEIMRET ERCRLEMENK 300 RIDMILQSQR KIVDSIDRAF GL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24860.1	3e-34	Trihelix family protein