PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0007525.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 229aa    MW: 26187.1 Da    PI: 5.6234
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0007525.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.11.7e-121864248
                               SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               g+W + Ed++ +d+vk++G g W + +r+ g++R++k++++r+++yl
  Rmu_sc0007525.1_g000001.1 18 GAWAASEDQIVKDYVKKHGVGKWGKLSRETGLKRCGKSVRLRLLNYL 64
                               79*******************************************97 PP
2Myb_DNA-binding52.51.1e-1670114147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                rg+ T++E+el+++++k+lG++ W+++a +++ gRt++++k++w++ 
  Rmu_sc0007525.1_g000001.1  70 RGNITEDEEELIIRLHKLLGNR-WSLVAGRIP-GRTDNEIKNYWNSC 114
                                7999******************.*********.***********975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MGKSSTCYDK NEGPKKGGAW AASEDQIVKD YVKKHGVGKW GKLSRETGLK RCGKSVRLRL  60
LNYLRPGIVR GNITEDEEEL IIRLHKLLGN RWSLVAGRIP GRTDNEIKNY WNSCLKRKLQ  120
QQNHLEVPRN EEIREDLSSS AAVAAAAEKN PHLTGNNVNE DEDYHQHHDV DFAVGIEFEA  180
IDNNNGTGDD EHLRDDLWWN NFIMDLNDIQ LDASEFQPDF PEIRLGNLW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.14e-49MYB family protein